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    Glt8d2 glycosyltransferase 8 domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366859, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Glt8d2provided by RGD
    Official Full Name
    glycosyltransferase 8 domain containing 2provided by RGD
    Primary source
    RGD:1560432
    See related
    EnsemblRapid:ENSRNOG00000033579 AllianceGenome:RGD:1560432
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560432
    Summary
    Predicted to enable UDP-glycosyltransferase activity. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D2 (glycosyltransferase 8 domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 19.8), Uterus (RPKM 17.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Glt8d2 in Genome Data Viewer
    Location:
    7q13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (22917055..22968616)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (21029534..21081081)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (27146382..27196689)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene host cell factor C2 Neighboring gene thymine-DNA glycosylase Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 6 Neighboring gene heat shock protein 90 beta family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    glycosyltransferase 8 domain-containing protein 2
    XP_008763518.1
    XP_008763519.1
    XP_008763520.1
    XP_008763521.1
    XP_038936428.1
    XP_063120663.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432431.1 → NP_001419360.1  glycosyltransferase 8 domain-containing protein 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8I6AAY8, A6IFI4

    2. NM_001432436.1 → NP_001419365.1  glycosyltransferase 8 domain-containing protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8I6AAY8

    3. NM_001432437.1 → NP_001419366.1  glycosyltransferase 8 domain-containing protein 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8I6ANR7, A6IFI6

    4. NM_001432438.1 → NP_001419367.1  glycosyltransferase 8 domain-containing protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A6IFI6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      22917055..22968616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008765297.4 → XP_008763519.1  glycosyltransferase 8 domain-containing protein 2 isoform X2

      Related
      ENSRNOP00000089135.2, ENSRNOT00000103757.2
      Conserved Domains (1) summary
      cl11394
      Location:69 → 336
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. XM_039080500.2 → XP_038936428.1  glycosyltransferase 8 domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A6IFI6
      Conserved Domains (1) summary
      cl11394
      Location:69 → 279
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    3. XM_008765296.4 → XP_008763518.1  glycosyltransferase 8 domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_008763518.1

      UniProtKB/TrEMBL
      A6IFI6
      Conserved Domains (1) summary
      cl11394
      Location:69 → 293
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    4. XM_008765298.4 → XP_008763520.1  glycosyltransferase 8 domain-containing protein 2 isoform X5

      Related
      ENSRNOP00000095671.1, ENSRNOT00000105403.2
      Conserved Domains (1) summary
      cl11394
      Location:69 → 293
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    5. XM_008765299.4 → XP_008763521.1  glycosyltransferase 8 domain-containing protein 2 isoform X6

      Conserved Domains (1) summary
      cl11394
      Location:69 → 294
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    6. XM_063264593.1 → XP_063120663.1  glycosyltransferase 8 domain-containing protein 2 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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