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    Ankrd28 ankyrin repeat domain 28 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306264, updated on 9-Dec-2024

    Summary

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    Symbol
    Ankrd28provided by RGD
    Full Name
    ankyrin repeat domain 28provided by RGD
    Primary source
    RGD:1559931
    See related
    EnsemblRapid:ENSRNOG00000019697 AllianceGenome:RGD:1559931
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559931
    Summary
    Orthologous to human ANKRD28 (ankyrin repeat domain 28). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 112.0), Heart (RPKM 101.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd28 in Genome Data Viewer
    Location:
    16p16
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (6924868..7056593, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (6918487..7050244, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (7816876..7879023, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene 2-hydroxyacyl-CoA lyase 1 Neighboring gene biotinidase Neighboring gene mitochondrial ribosomal protein L37, pseudogene 1 Neighboring gene uncharacterized LOC120097394 Neighboring gene uncharacterized LOC102550037 Neighboring gene uncharacterized LOC134482451

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
    Names
    serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427331.1 → NP_001414260.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A0A8I5ZRD0
      Related
      ENSRNOP00000081029.1, ENSRNOT00000112368.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      6924868..7056593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039094981.2 → XP_038950909.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

      UniProtKB/TrEMBL
      A0A8I5Y6T8
      Related
      ENSRNOP00000111956.1, ENSRNOT00000142077.1
      Conserved Domains (6) summary
      PHA02874
      Location:498 → 807
      PHA02874; ankyrin repeat protein; Provisional
      PHA03095
      Location:130 → 398
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:84 → 114
      ANK; ANK repeat [structural motif]
      pfam00023
      Location:871 → 901
      Ank; Ankyrin repeat
      pfam12796
      Location:771 → 864
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:29 → 245
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_039094979.2 → XP_038950907.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X2

      UniProtKB/TrEMBL
      F1M400
      Related
      ENSRNOP00000078059.2, ENSRNOT00000098800.2
      Conserved Domains (6) summary
      PHA02874
      Location:546 → 855
      PHA02874; ankyrin repeat protein; Provisional
      PHA03095
      Location:14 → 302
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:132 → 162
      ANK; ANK repeat [structural motif]
      pfam00023
      Location:919 → 949
      Ank; Ankyrin repeat
      pfam12796
      Location:819 → 912
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:922 → 998
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_063275354.1 → XP_063131424.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

      UniProtKB/TrEMBL
      A0A8I5Y6T8

    4. XM_039094983.2 → XP_038950911.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

      UniProtKB/TrEMBL
      A0A8I5Y6T8
      Conserved Domains (6) summary
      PHA02874
      Location:498 → 807
      PHA02874; ankyrin repeat protein; Provisional
      PHA03095
      Location:130 → 398
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:84 → 114
      ANK; ANK repeat [structural motif]
      pfam00023
      Location:871 → 901
      Ank; Ankyrin repeat
      pfam12796
      Location:771 → 864
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:29 → 245
      Ank_2; Ankyrin repeats (3 copies)

    5. XM_039094977.2 → XP_038950905.2  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1

      UniProtKB/TrEMBL
      A0A8I6GHK6

    6. XM_039094980.2 → XP_038950908.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

      UniProtKB/TrEMBL
      A0A8I5Y6T8
      Conserved Domains (6) summary
      PHA02874
      Location:498 → 807
      PHA02874; ankyrin repeat protein; Provisional
      PHA03095
      Location:130 → 398
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:84 → 114
      ANK; ANK repeat [structural motif]
      pfam00023
      Location:871 → 901
      Ank; Ankyrin repeat
      pfam12796
      Location:771 → 864
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:29 → 245
      Ank_2; Ankyrin repeats (3 copies)

    7. XM_039094984.2 → XP_038950912.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X4

      Conserved Domains (3) summary
      PHA03095
      Location:63 → 343
      PHA03095; ankyrin-like protein; Provisional
      COG0666
      Location:268 → 447
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:356 → 388
      ANK; ANK repeat [structural motif]

    RNA

    1. XR_005494817.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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