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    B0564.2 Fe2OG dioxygenase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182043, updated on 2-Nov-2024

    Summary

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    Official Symbol
    B0564.2
    Official Full Name
    Fe2OG dioxygenase domain-containing protein
    Primary source
    WormBase:WBGene00007202
    Locus tag
    CELE_B0564.2
    See related
    AllianceGenome:WB:WBGene00007202
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ALKBH6 (alkB homolog 6). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See B0564.2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (13107659..13111500)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene RAP domain-containing protein Neighboring gene RNA interference defective protein 11 Neighboring gene Bestrophin homolog 1 Neighboring gene Bestrophin homolog 2 Neighboring gene Homeobox domain-containing protein;Homeobox protein unc-30 Neighboring gene ncRNA Neighboring gene F-box domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Fe2OG dioxygenase domain-containing protein
    NP_001294012.1
    • Confirmed by transcript evidence
    NP_502522.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      13107659..13111500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070121.5 → NP_502522.2  Fe2OG dioxygenase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502522.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17527
      Conserved Domains (1) summary
      cl21496
      Location:23 → 215
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    2. NM_001307083.3 → NP_001294012.1  Fe2OG dioxygenase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294012.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061AJK0
    Nucleotide Protein
    Heading Accession and Version

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