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    famp-1 ILEI/PANDER domain-containing protein;Transposase [ Caenorhabditis elegans ]

    Gene ID: 177015, updated on 9-Dec-2024

    Summary

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    Official Symbol
    famp-1
    Official Full Name
    ILEI/PANDER domain-containing protein;Transposase
    Primary source
    WormBase:WBGene00019786
    Locus tag
    CELE_M70.4
    See related
    AllianceGenome:WB:WBGene00019786
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to several human genes including FAM3C (FAM3 metabolism regulating signaling molecule C). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See famp-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    14
    Sequence:
    Chromosome: IV; NC_003282.8 (2253003..2263664, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene protein of unknown function WSN domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RING-type domain-containing protein Neighboring gene ETS domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Human FAM3C restores memory-based thermotaxis of Caenorhabditis elegans famp-1/m70.4 loss-of-function mutants. Nakano M, et al. PNAS Nexus, 2022 Nov. PMID 36712359, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ILEI/PANDER domain-containing protein;Transposase
    NP_001368349.1
    • Confirmed by transcript evidence
    NP_500183.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      2253003..2263664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067782.7 → NP_500183.2  ILEI/PANDER domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500183.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q688B0
      Conserved Domains (2) summary
      cd13936
      Location:290 → 438
      PANDER_like; Domains similar to the Pancreatic-derived factor
      cl11394
      Location:508 → 663
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. NM_001380086.1 → NP_001368349.1  Transposase [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PC94
    Nucleotide Protein
    Heading Accession and Version

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