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    F23C8.13 PDZ domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171799, updated on 18-Sep-2024

    Summary

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    Official Symbol
    F23C8.13
    Official Full Name
    PDZ domain-containing protein
    Primary source
    WormBase:WBGene00017741
    Locus tag
    CELE_F23C8.13
    See related
    AllianceGenome:WB:WBGene00017741
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F23C8.13 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (2415131..2418543)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Protein zwilch homolog Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Electron transfer flavoprotein subunit beta Neighboring gene Charged multivesicular body protein 1b Neighboring gene Tyrosine-protein kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PDZ domain-containing protein
    NP_001293314.1
    • Confirmed by transcript evidence
    NP_001293315.1
    • Confirmed by transcript evidence
    NP_740810.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2415131..2418543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_170826.8 → NP_740810.2  PDZ domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_740810.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T7Y4
      Conserved Domains (1) summary
      cd00992
      Location:47 → 130
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    2. NM_001306385.3 → NP_001293314.1  PDZ domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293314.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061AL77
      Conserved Domains (1) summary
      cd00992
      Location:3 → 69
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    3. NM_001306386.3 → NP_001293315.1  PDZ domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293315.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061AD67
    Nucleotide Protein
    Heading Accession and Version

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