U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cd59a CD59a antigen [ Mus musculus (house mouse) ]

    Gene ID: 12509, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cd59aprovided by MGI
    Official Full Name
    CD59a antigenprovided by MGI
    Primary source
    MGI:MGI:109177
    See related
    Ensembl:ENSMUSG00000032679 AllianceGenome:MGI:109177
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cd59; MACIF; MAC-IP
    Summary
    Predicted to enable complement binding activity. Involved in several processes, including negative regulation of angiogenesis; negative regulation of fibroblast growth factor production; and negative regulation of vascular endothelial growth factor receptor signaling pathway. Acts upstream of or within negative regulation of activation of membrane attack complex. Located in external side of plasma membrane. Is expressed in several structures, including Meckel's cartilage; nervous system; neural retina; skeleton; and testis. Human ortholog(s) of this gene implicated in colorectal carcinoma and ovarian cancer. Orthologous to human CD59 (CD59 molecule (CD59 blood group)). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in bladder adult (RPKM 34.6), subcutaneous fat pad adult (RPKM 26.7) and 24 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cd59a in Genome Data Viewer
    Location:
    2 E2; 2 54.53 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (103926177..103945755)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104095753..104115410)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05279 Neighboring gene F-box protein 3 Neighboring gene predicted gene, 24644 Neighboring gene STARR-seq mESC enhancer starr_05280 Neighboring gene CD59b antigen Neighboring gene RIKEN cDNA A930018P22 gene Neighboring gene RIKEN cDNA D430041D05 gene Neighboring gene STARR-seq mESC enhancer starr_05283 Neighboring gene STARR-seq mESC enhancer starr_05284 Neighboring gene predicted gene, 22501

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables complement binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables complement binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in negative regulation of activation of membrane attack complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within negative regulation of activation of membrane attack complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of activation of membrane attack complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of activation of membrane attack complex ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of complement activation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of complement-dependent cytotoxicity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of fibroblast growth factor production IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of vascular endothelial growth factor receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of T cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of complement activation ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    acts_upstream_of_or_within regulation of complement-dependent cytotoxicity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in compact myelin ISO
    Inferred from Sequence Orthology
    more info
     
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in sarcolemma ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    CD59A glycoprotein
    Names
    CD59 antigen
    MAC-inhibitory protein
    membrane attack complex inhibition factor
    protectin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111060.3NP_001104530.1  CD59A glycoprotein precursor

      See identical proteins and their annotated locations for NP_001104530.1

      Status: VALIDATED

      Source sequence(s)
      BX813317
      Consensus CDS
      CCDS16487.1
      UniProtKB/Swiss-Prot
      O55186, Q542R7
      UniProtKB/TrEMBL
      A2BI31, Q920G6
      Related
      ENSMUSP00000132774.2, ENSMUST00000168176.8
      Conserved Domains (1) summary
      smart00134
      Location:24100
      LU; Ly-6 antigen / uPA receptor -like domain
    2. NM_001416923.1NP_001403852.1  CD59A glycoprotein precursor

      Status: VALIDATED

      Source sequence(s)
      BX813317
      UniProtKB/Swiss-Prot
      O55186, Q542R7
      UniProtKB/TrEMBL
      A2BI31
    3. NM_001416924.1NP_001403853.1  CD59A glycoprotein precursor

      Status: VALIDATED

      Source sequence(s)
      BX813317
      UniProtKB/Swiss-Prot
      O55186, Q542R7
      UniProtKB/TrEMBL
      A2BI31
    4. NM_001416925.1NP_001403854.1  CD59A glycoprotein precursor

      Status: VALIDATED

      Source sequence(s)
      BX813317
      UniProtKB/Swiss-Prot
      O55186, Q542R7
      UniProtKB/TrEMBL
      A2BI31
    5. NM_007652.6NP_031678.1  CD59A glycoprotein precursor

      See identical proteins and their annotated locations for NP_031678.1

      Status: VALIDATED

      Source sequence(s)
      BX813317
      Consensus CDS
      CCDS16487.1
      UniProtKB/Swiss-Prot
      O55186, Q542R7
      UniProtKB/TrEMBL
      A2BI31, Q920G6
      Related
      ENSMUSP00000048041.6, ENSMUST00000040423.12
      Conserved Domains (1) summary
      smart00134
      Location:24100
      LU; Ly-6 antigen / uPA receptor -like domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      103926177..103945755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)