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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001143839.4 → NP_001137311.1 cGMP-dependent 3',5'-cyclic phosphodiesterase isoform PDE2A2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate start codon, compared to variant 1. The encoded isoform (PDE2A2) is shorter and has a distinct N-terminus, compared to isoform PDE2A3. This variant (2) is assembled from partial human transcripts. The full-length exon combination is inferred from the mouse ortholog (NM_001143849.1, see PMID: 21724846)
- Source sequence(s)
-
AP003065, AP005019
- Consensus CDS
-
CCDS44670.1
- UniProtKB/TrEMBL
-
Q8IW54
- Related
- ENSP00000442256.1, ENST00000544570.5
- Conserved Domains (2) summary
-
- smart00065
Location:402 → 551
- GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
- pfam00233
Location:648 → 878
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
-
NM_001146209.3 → NP_001139681.1 cGMP-dependent 3',5'-cyclic phosphodiesterase isoform PDE2A4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate start codon, compared to variant 1. The encoded isoform, PDE2A4 (AY495087.1), is shorter and has a distinct N-terminus, compared to isoform PDE2A3.
- Source sequence(s)
-
AP003065, AP005019
- Consensus CDS
-
CCDS53678.1
- UniProtKB/TrEMBL
-
Q8IW54
- Related
- ENSP00000446399.1, ENST00000540345.5
- Conserved Domains (2) summary
-
- smart00065
Location:400 → 549
- GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
- pfam00233
Location:646 → 879
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
-
NM_001243784.2 → NP_001230713.1 cGMP-dependent 3',5'-cyclic phosphodiesterase isoform PDE2A1
See identical proteins and their annotated locations for NP_001230713.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate start codon, compared to variant 1. The encoded isoform (PDE2A1) is shorter and has a distinct N-terminus, compared to isoform 1. This variant (2) is assembled from partial human transcripts. The full-length exon combination is inferred from the mouse ortholog (NM_001243757.1, see PMID: 19632989)
- Source sequence(s)
-
AP003065, AP005019
- Consensus CDS
-
CCDS73345.1
- UniProtKB/TrEMBL
-
Q8IW54
- Related
- ENSP00000411657.3, ENST00000444035.6
- Conserved Domains (2) summary
-
- smart00065
Location:388 → 537
- GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
- pfam00233
Location:634 → 867
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
-
NM_002599.5 → NP_002590.1 cGMP-dependent 3',5'-cyclic phosphodiesterase isoform PDE2A3
See identical proteins and their annotated locations for NP_002590.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform, PDE2A3 (see PMID:9210593).
- Source sequence(s)
-
AP003065, AP005019
- Consensus CDS
-
CCDS8216.1
- UniProtKB/Swiss-Prot
- B2R646, B3KRV5, E9PGI1, F6W5Z0, O00408, Q5J791, Q5J792, Q5J793, Q6ZMR1
- UniProtKB/TrEMBL
-
Q8IW54
- Related
- ENSP00000334910.5, ENST00000334456.10
- Conserved Domains (2) summary
-
- smart00065
Location:409 → 558
- GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
- pfam00233
Location:655 → 885
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
72576141..72674422 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005274040.4 → XP_005274097.1 cGMP-dependent 3',5'-cyclic phosphodiesterase isoform X1
- UniProtKB/TrEMBL
-
Q8IW54
- Conserved Domains (2) summary
-
- smart00065
Location:408 → 557
- GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
- pfam00233
Location:654 → 887
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
72502658..72602659 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369105.1 → XP_054225080.1 cGMP-dependent 3',5'-cyclic phosphodiesterase isoform X1
- UniProtKB/TrEMBL
-
Q8IW54