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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_041815.1 RefSeqGene
- Range
-
5067..84280
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1412
mRNA and Protein(s)
-
NM_001007226.1 → NP_001007227.1 speckle-type POZ protein
See identical proteins and their annotated locations for NP_001007227.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Transcript variants 1-6 encode the same protein.
- Source sequence(s)
-
AK123385, AW449169, BC001269, BM693397, BQ226031, BX282325, W84567
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Related
- ENSP00000424119.2, ENST00000514121.6
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001007227.1 → NP_001007228.1 speckle-type POZ protein
See identical proteins and their annotated locations for NP_001007228.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Transcript variants 1-6 encode the same protein.
- Source sequence(s)
-
AK123385, AW449169, BC001269, BM693397, BQ226031, BX282325, W84567
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001007228.2 → NP_001007229.1 speckle-type POZ protein
See identical proteins and their annotated locations for NP_001007229.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Transcript variants 1-6 encode the same protein.
- Source sequence(s)
-
AK123385, AW449169, BC001269, BM693397, BQ226031, BX282325, W84567
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Related
- ENSP00000425905.1, ENST00000504102.6
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001007229.1 → NP_001007230.1 speckle-type POZ protein
See identical proteins and their annotated locations for NP_001007230.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Transcript variants 1-6 encode the same protein.
- Source sequence(s)
-
AK123385, AW449169, BC001269, BM693397, BQ226031, BX282325, CB992730, W84567
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Related
- ENSP00000240327.2, ENST00000347630.6
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001007230.1 → NP_001007231.1 speckle-type POZ protein
See identical proteins and their annotated locations for NP_001007231.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Transcript variants 1-6 encode the same protein.
- Source sequence(s)
-
AK123385, AW449169, BC001269, BM693397, BQ226031, BX282325, CB992730, W84567
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Related
- ENSP00000426986.2, ENST00000509079.6
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001370730.1 → NP_001357659.1 speckle-type POZ protein
Status: REVIEWED
- Source sequence(s)
-
AC006487
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Related
- ENSP00000420908.1, ENST00000503676.5
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001370731.1 → NP_001357660.1 speckle-type POZ protein
Status: REVIEWED
- Source sequence(s)
-
AC006487
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_001370732.1 → NP_001357661.1 speckle-type POZ protein
Status: REVIEWED
- Source sequence(s)
-
AC006487
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
-
NM_003563.3 → NP_003554.1 speckle-type POZ protein
See identical proteins and their annotated locations for NP_003554.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Transcript variants 1-6 encode the same protein.
- Source sequence(s)
-
AK123385, AW449169, BC001269, BM693397, BQ226031, BX282325, W84567
- Consensus CDS
-
CCDS11551.1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Related
- ENSP00000377001.2, ENST00000393328.6
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
49598884..49678163 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024450995.2 → XP_024306763.1 speckle-type POZ protein isoform X1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0
- Conserved Domains (3) summary
-
- cd03774
Location:28 → 166
- MATH_SPOP; Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled ...
- cd18279
Location:182 → 301
- BTB_POZ_SPOP-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein (SPOP) and similar proteins
- cd18518
Location:297 → 367
- BACK_SPOP; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein (SPOP)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
50462011..50541274 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054317516.1 → XP_054173491.1 speckle-type POZ protein isoform X1
- UniProtKB/Swiss-Prot
- B2R6S3, D3DTW7, O43791, Q53HJ1
- UniProtKB/TrEMBL
-
A8KAI0