U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit [ Mus musculus (house mouse) ]

    Gene ID: 12290, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cacna1eprovided by MGI
    Official Full Name
    calcium channel, voltage-dependent, R type, alpha 1E subunitprovided by MGI
    Primary source
    MGI:MGI:106217
    See related
    Ensembl:ENSMUSG00000004110 AllianceGenome:MGI:106217
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BII; Cach6; Cav2.3; Cchra1; alpha1E; Cacnl1a6; A430040I15
    Summary
    This gene encodes an integral membrane protein that belongs to the calcium channel alpha-1 subunits family. Voltage-sensitive calcium channels mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes. Voltage-dependent calcium channels are multi-subunit complexes, comprised of alpha-1, alpha-2, beta and delta subunits in a 1:1:1:1 ratio. The isoform alpha-1E gives rise to R-type calcium currents and belongs to the high-voltage activated group. Calcium channels containing the alpha-1E subunit may be involved in the modulation of neuronal firing patterns, an important component of information processing. [provided by RefSeq, Jul 2008]
    Expression
    Biased expression in frontal lobe adult (RPKM 6.4), cortex adult (RPKM 6.1) and 8 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cacna1e in Genome Data Viewer
    Location:
    1 G3; 1 66.14 cM
    Exon count:
    56
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (154266552..154760374, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (154390806..154884785, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930532M18 gene Neighboring gene predicted gene, 30465 Neighboring gene golgi SNAP receptor complex member 1 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr1:156464654-156464955 Neighboring gene STARR-positive B cell enhancer mm9_chr1:156493503-156493803 Neighboring gene STARR-seq mESC enhancer starr_02714 Neighboring gene STARR-seq mESC enhancer starr_02715 Neighboring gene STARR-seq mESC enhancer starr_02716 Neighboring gene STARR-positive B cell enhancer ABC_E4359 Neighboring gene STARR-positive B cell enhancer ABC_E2014 Neighboring gene predicted gene, 51649 Neighboring gene STARR-seq mESC enhancer starr_02717 Neighboring gene STARR-positive B cell enhancer mm9_chr1:156696300-156696601 Neighboring gene STARR-positive B cell enhancer mm9_chr1:156698156-156698457 Neighboring gene STARR-seq mESC enhancer starr_02718 Neighboring gene predicted gene, 30521 Neighboring gene predicted gene, 41976 Neighboring gene predicted gene, 30602

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within behavioral fear response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within behavioral response to pain IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in calcium ion import ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in calcium ion import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within calcium ion transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within calcium ion transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in chemical synaptic transmission IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within establishment of localization in cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within fear response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within flagellated sperm motility IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within glucose homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within locomotory behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within nervous system process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of heart rate IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of insulin secretion involved in cellular response to glucose stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of somatostatin secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of synaptic vesicle exocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within response to pain IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within sensory perception of pain IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within transmission of nerve impulse IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within visual learning IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in GABA-ergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in perikaryon ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in presynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of voltage-gated calcium channel complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of voltage-gated calcium channel complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    part_of voltage-gated calcium channel complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of voltage-gated calcium channel complex TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    voltage-dependent R-type calcium channel subunit alpha-1E
    Names
    brain calcium channel II
    calcium channel, L type, alpha-1 polypeptide
    calcium channel, voltage-dependent, L type, alpha 1E subunit
    voltage-gated calcium channel subunit alpha Cav2.3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009782.3NP_033912.2  voltage-dependent R-type calcium channel subunit alpha-1E

      Status: REVIEWED

      Source sequence(s)
      AC099707, AC101727, AC122040
      Consensus CDS
      CCDS78710.1
      UniProtKB/TrEMBL
      A0A087WS83, B2RWX7
      Related
      ENSMUSP00000140937.2, ENSMUST00000187541.7
      Conserved Domains (5) summary
      pfam00520
      Location:14981737
      Ion_trans; Ion transport protein
      pfam05439
      Location:341374
      JTB; Jumping translocation breakpoint protein (JTB)
      pfam07816
      Location:20132117
      DUF1645; Protein of unknown function (DUF1645)
      pfam08763
      Location:18101884
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:17451808
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      154266552..154760374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243929.1XP_030099789.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21682243
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    2. XM_017312578.3XP_017168067.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21682243
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    3. XM_017312848.1XP_017168337.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X14

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:14801737
      Ion_trans; Ion transport protein
      pfam08763
      Location:18101883
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:20222097
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:17461799
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    4. XM_017312712.1XP_017168201.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X8

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:15961853
      Ion_trans; Ion transport protein
      pfam08763
      Location:19261999
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21382213
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18621915
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    5. XM_017312660.1XP_017168149.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X6

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16071864
      Ion_trans; Ion transport protein
      pfam08763
      Location:19372010
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21492224
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18731926
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    6. XM_017312628.1XP_017168117.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X4

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16221879
      Ion_trans; Ion transport protein
      pfam08763
      Location:19522025
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21642239
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18881941
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    7. XM_017312642.1XP_017168131.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X5

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16221879
      Ion_trans; Ion transport protein
      pfam08763
      Location:19522025
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21642239
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18881941
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    8. XM_017312619.1XP_017168108.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X3

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21642239
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    9. XM_017312730.1XP_017168219.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X9

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21252200
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    10. XM_017312613.1XP_017168102.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21682243
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    11. XM_030243926.1XP_030099786.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21682243
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    12. XM_011247909.4XP_011246211.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

      See identical proteins and their annotated locations for XP_011246211.1

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21682243
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    13. XM_011247916.4XP_011246218.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X14

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:14801737
      Ion_trans; Ion transport protein
      pfam08763
      Location:18101883
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:20222097
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:17461799
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    14. XM_030244154.2XP_030100014.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X15

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam17069
      Location:19662090
      RSRP; Arginine/Serine-Rich protein 1
      pfam00520
      Location:14311688
      Ion_trans; Ion transport protein
      pfam08763
      Location:17611834
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:16971750
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    15. XM_017312745.2XP_017168234.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X10

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21212196
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    16. XM_017312824.2XP_017168313.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X13

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16071864
      Ion_trans; Ion transport protein
      pfam08763
      Location:19372010
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21022177
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18731926
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    17. XM_017312766.2XP_017168255.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X11

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21212196
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    18. XM_017312795.2XP_017168284.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X12

      UniProtKB/TrEMBL
      B2RWX7
      Conserved Domains (4) summary
      pfam00520
      Location:16071864
      Ion_trans; Ion transport protein
      pfam08763
      Location:19372010
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21022177
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18731926
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    19. XM_017312682.2XP_017168171.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X7

      UniProtKB/TrEMBL
      B2RWX7
      Related
      ENSMUSP00000148507.2, ENSMUST00000211821.2
      Conserved Domains (4) summary
      pfam00520
      Location:16071864
      Ion_trans; Ion transport protein
      pfam08763
      Location:19372010
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam10500
      Location:21452220
      SR-25; Nuclear RNA-splicing-associated protein
      pfam16905
      Location:18731926
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    20. XM_036155941.1XP_036011834.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X16

      UniProtKB/Swiss-Prot
      Q61290
      Conserved Domains (3) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein
      pfam08763
      Location:19562029
      Ca_chan_IQ; Voltage gated calcium channel IQ domain
      pfam16905
      Location:18921945
      GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    21. XM_006529105.5XP_006529168.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X17

      Conserved Domains (1) summary
      pfam00520
      Location:16261883
      Ion_trans; Ion transport protein