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    Hmga2-ps1 high mobility group AT-hook 2, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 15365, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Hmga2-ps1provided by MGI
    Official Full Name
    high mobility group AT-hook 2, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:106023
    See related
    Ensembl:ENSMUSG00000121135 AllianceGenome:MGI:106023
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm7996; [y]i-c; EG666235; Hmgic-ps1
    Summary
    Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Hmga2-ps1 in Genome Data Viewer
    Location:
    1; 1 H4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (176662190..176663699, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (176834624..176836133, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3336 Neighboring gene STARR-seq mESC enhancer starr_03119 Neighboring gene STARR-seq mESC enhancer starr_03120 Neighboring gene predicted gene, 26104 Neighboring gene centrosomal protein 170 Neighboring gene STARR-positive B cell enhancer ABC_E10063 Neighboring gene STARR-positive B cell enhancer ABC_E10064 Neighboring gene STARR-positive B cell enhancer ABC_E3337 Neighboring gene microRNA 350 Neighboring gene serologically defined colon cancer antigen 8 Neighboring gene STARR-positive B cell enhancer ABC_E5862 Neighboring gene predicted gene, 38158 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:178876211-178876412 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:178880303-178880504 Neighboring gene predicted gene 15423 Neighboring gene thymoma viral proto-oncogene 3 Neighboring gene STARR-positive B cell enhancer ABC_E7781 Neighboring gene predicted gene, 36904

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of the gene coding for murine high-mobility-group protein HMGI-C. Manfioletti G, et al. Gene, 1995 Dec 29. PMID 8566786
    2. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037996.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK033703
      Related
      ENSMUST00000247245.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      176662190..176663699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001395.1: Suppressed sequence

      Description
      NG_001395.1: This RefSeq was permanently suppressed because there is good evidence that this locus is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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