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    Albfm1 albumin superfamily member 1 [ Mus musculus (house mouse) ]

    Gene ID: 622307, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Albfm1provided by MGI
    Official Full Name
    albumin superfamily member 1provided by MGI
    Primary source
    MGI:MGI:1923342
    See related
    Ensembl:ENSMUSG00000070690 AllianceGenome:MGI:1923342
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Arg; Gm17754; 5830473C10Rik
    Summary
    Predicted to be active in cytoplasm. Is expressed in liver and metanephros. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in liver adult (RPKM 9.4), liver E18 (RPKM 3.6) and 1 other tissue See more
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    Genomic context

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    See Albfm1 in Genome Data Viewer
    Location:
    5 E1; 5 44.78 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (90708485..90745986)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (90560626..90598127)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene afamin Neighboring gene zinc finger, BED domain containing 4 pseudogene Neighboring gene predicted gene, 42109 Neighboring gene STARR-positive B cell enhancer ABC_E4764 Neighboring gene Ras association (RalGDS/AF-6) domain family member 6 Neighboring gene STARR-seq mESC enhancer starr_13601 Neighboring gene STARR-seq mESC enhancer starr_13602 Neighboring gene STARR-seq mESC enhancer starr_13603 Neighboring gene predicted gene, 36084

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Alpha-fetoprotein related gene (ARG): a new member of the albumin gene family that is no longer functional in primates. Naidu S, et al. Gene, 2010 Jan 1. PMID 19733224, Free PMC Article
    2. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851
    3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    alpha-fetoprotein related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252661.1 → NP_001239590.1  alpha-fetoprotein related protein

      Status: VALIDATED

      Source sequence(s)
      AC135240, BB032759, CB521232
      Consensus CDS
      CCDS57355.1
      UniProtKB/TrEMBL
      F8VQ07
      Related
      ENSMUSP00000092198.5, ENSMUST00000094615.8
      Conserved Domains (1) summary
      pfam00273
      Location:224 → 395
      Serum_albumin; Serum albumin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      90708485..90745986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254748.1 → XP_030110608.1  alpha-fetoprotein related protein isoform X4

      Conserved Domains (1) summary
      pfam00273
      Location:224 → 395
      Serum_albumin; Serum albumin family

    2. XM_006535174.4 → XP_006535237.1  alpha-fetoprotein related protein isoform X6

      UniProtKB/TrEMBL
      A0A0J9YV75
      Related
      ENSMUSP00000144527.2, ENSMUST00000200765.2
      Conserved Domains (1) summary
      pfam00273
      Location:224 → 395
      Serum_albumin; Serum albumin family

    3. XM_006535168.3 → XP_006535231.1  alpha-fetoprotein related protein isoform X1

      Conserved Domains (1) summary
      pfam00273
      Location:213 → 384
      Serum_albumin; Serum albumin family

    4. XM_006535169.3 → XP_006535232.1  alpha-fetoprotein related protein isoform X2

      Conserved Domains (1) summary
      pfam00273
      Location:195 → 366
      Serum_albumin; Serum albumin family

    5. XM_006535172.3 → XP_006535235.1  alpha-fetoprotein related protein isoform X3

      See identical proteins and their annotated locations for XP_006535235.1

      Conserved Domains (1) summary
      pfam00273
      Location:175 → 346
      Serum_albumin; Serum albumin family

    6. XM_006535170.3 → XP_006535233.1  alpha-fetoprotein related protein isoform X3

      See identical proteins and their annotated locations for XP_006535233.1

      Conserved Domains (1) summary
      pfam00273
      Location:175 → 346
      Serum_albumin; Serum albumin family

    7. XM_006535171.3 → XP_006535234.1  alpha-fetoprotein related protein isoform X3

      See identical proteins and their annotated locations for XP_006535234.1

      Conserved Domains (1) summary
      pfam00273
      Location:175 → 346
      Serum_albumin; Serum albumin family

    8. XM_036165399.1 → XP_036021292.1  alpha-fetoprotein related protein isoform X5

      Conserved Domains (1) summary
      pfam00273
      Location:18 → 189
      Serum_albumin; Serum albumin family

    RNA

    1. XR_389286.4 RNA Sequence

    2. XR_389287.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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