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    Cfap20dc CFAP20 domain containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361016, updated on 9-Dec-2024

    Summary

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    Symbol
    Cfap20dcprovided by RGD
    Full Name
    CFAP20 domain containingprovided by RGD
    Primary source
    RGD:1359720
    See related
    EnsemblRapid:ENSRNOG00000007206 AllianceGenome:RGD:1359720
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CFAP20DC (CFAP20 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 45.6), Testes (RPKM 26.4) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cfap20dc in Genome Data Viewer
    Location:
    15p14
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (18661562..18907226)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (16231248..16476978)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (17664838..17918216)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352892 Neighboring gene uncharacterized LOC120096927 Neighboring gene uncharacterized LOC108353016 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134481948 Neighboring gene uncharacterized LOC102548458 Neighboring gene uncharacterized LOC120096928 Neighboring gene FAM3 metabolism regulating signaling molecule D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC116196

    General protein information

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    Preferred Names
    protein CFAP20DC
    Names
    uncharacterized protein C3orf67 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014137.2 → NP_001014159.2  protein CFAP20DC isoform 2

      See identical proteins and their annotated locations for NP_001014159.2

      Status: PROVISIONAL

      Source sequence(s)
      BC098040
      UniProtKB/Swiss-Prot
      Q4V7B1
      UniProtKB/TrEMBL
      A0A8I6API2
      Related
      ENSRNOP00000057881.5, ENSRNOT00000061169.6
      Conserved Domains (1) summary
      pfam05018
      Location:6 → 171
      DUF667; Protein of unknown function (DUF667)

    2. NM_001431636.1 → NP_001418565.1  protein CFAP20DC isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A0A0G2JXD4

    3. NM_001431639.1 → NP_001418568.1  protein CFAP20DC isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A0A0G2JXD4, A0A8I5ZYU1

    4. NM_001431640.1 → NP_001418569.1  protein CFAP20DC isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015

    5. NM_001431641.1 → NP_001418570.1  protein CFAP20DC isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015

    6. NM_001431642.1 → NP_001418571.1  protein CFAP20DC isoform 6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015

    RNA

    1. NR_197236.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      18661562..18907226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274380.1 → XP_063130450.1  protein CFAP20DC isoform X1

      Related
      ENSRNOP00000084249.2, ENSRNOT00000098727.2

    2. XM_063274382.1 → XP_063130452.1  protein CFAP20DC isoform X4

      UniProtKB/TrEMBL
      A0A8I6API2

    3. XM_063274383.1 → XP_063130453.1  protein CFAP20DC isoform X5

      UniProtKB/TrEMBL
      A0A0G2JXD4

    4. XM_039093454.2 → XP_038949382.1  protein CFAP20DC isoform X2

      Related
      ENSRNOP00000070228.2, ENSRNOT00000085530.3
      Conserved Domains (2) summary
      pfam05018
      Location:1 → 188
      DUF667; Protein of unknown function (DUF667)
      NF033845
      Location:299 → 613
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

    5. XM_063274381.1 → XP_063130451.1  protein CFAP20DC isoform X3

      UniProtKB/TrEMBL
      A0A8I6API2
      Related
      ENSRNOP00000100356.1, ENSRNOT00000125508.1

    6. XM_063274387.1 → XP_063130457.1  protein CFAP20DC isoform X11

    7. XM_063274388.1 → XP_063130458.1  protein CFAP20DC isoform X12

    8. XM_063274386.1 → XP_063130456.1  protein CFAP20DC isoform X9

    9. XM_039093461.2 → XP_038949389.1  protein CFAP20DC isoform X10

      Conserved Domains (2) summary
      PHA03307
      Location:259 → 376
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05018
      Location:1 → 188
      DUF667; Protein of unknown function (DUF667)

    10. XM_063274384.1 → XP_063130454.1  protein CFAP20DC isoform X6

      UniProtKB/TrEMBL
      A0A8I6API2

    11. XM_039093459.2 → XP_038949387.1  protein CFAP20DC isoform X7

      UniProtKB/TrEMBL
      A0A8I6API2
      Conserved Domains (3) summary
      PHA03307
      Location:259 → 376
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam05018
      Location:1 → 188
      DUF667; Protein of unknown function (DUF667)
      NF033845
      Location:299 → 533
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

    12. XM_063274389.1 → XP_063130459.1  protein CFAP20DC isoform X13

    13. XM_063274390.1 → XP_063130460.1  protein CFAP20DC isoform X14

    14. XM_063274385.1 → XP_063130455.1  protein CFAP20DC isoform X8

      UniProtKB/TrEMBL
      F1M8H3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V7B1.1 GenPept UniProtKB/Swiss-Prot:Q4V7B1

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