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    hydra hydra [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33058, updated on 18-Sep-2024

    Summary

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    Official Symbol
    hydraprovided by FlyBase
    Official Full Name
    hydraprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031128
    Locus tag
    Dmel_CG1338
    See related
    AllianceGenome:FB:FBgn0031128
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG1338; Dmel\CG1338
    Orthologs
    all
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    Genomic context

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    See hydra in Genome Data Viewer
    Location:
    19E1-19E1; 1-65 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (20670832..20677063, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (20541859..20548090, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR45466 Neighboring gene Cytochrome P450 6v1 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43862 Neighboring gene long non-coding RNA:CR45610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster. Chen ST, et al. PLoS Genet, 2007 Jul. PMID 17616977, Free PMC Article
    2. Single-cell transcriptome sequencing reveals Wolbachia-mediated modification in early stages of Drosophila spermatogenesis. Dou W, et al. Proc Biol Sci, 2023 Jan 11. PMID 36629101, Free PMC Article
    3. A fly model establishes distinct mechanisms for synthetic CRISPR/Cas9 sex distorters. Fasulo B, et al. PLoS Genet, 2020 Mar. PMID 32168334, Free PMC Article
    4. Lack of global meiotic sex chromosome inactivation, and paucity of tissue-specific gene expression on the Drosophila X chromosome. Mikhaylova LM, et al. BMC Biol, 2011 May 4. PMID 21542906, Free PMC Article
    5. TRF4, the novel TBP-related protein of Drosophila melanogaster, is concentrated at the endoplasmic reticulum and copurifies with proteins participating in the processes associated with endoplasmic reticulum. Kurshakova MM, et al. J Cell Biochem, 2019 May. PMID 30426565

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Analysis of sequence polymorphism and divergence of hydra shows that it has evolved under positive selection in the lineage leading to D. melanogaster.
      Title: Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    hydra
    Names
    CG1338-PA
    CG1338-PB
    CG1338-PD
    CG1338-PF
    CG1338-PG
    CG1338-PH
    CG1338-PI
    CG1338-PJ
    hydra-PA
    hydra-PB
    hydra-PD
    hydra-PF
    hydra-PG
    hydra-PH
    hydra-PI
    hydra-PJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      20670832..20677063 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134561.7 → NP_608405.4  hydra, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608405.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JJS5, F3YDA7, Q8IQ35
      Related
      FBpp0076986
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    2. NM_001258853.1 → NP_001245782.1  hydra, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245782.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JJS5, F3YDA7, Q8IQ35
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    3. NM_001258854.1 → NP_001245783.1  hydra, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245783.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3YDA7, Q9VRB5
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    4. NM_001169341.2 → NP_001162812.2  hydra, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001162812.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JJS5, F3YDA7, Q8IQ35
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    5. NM_001258855.1 → NP_001245784.1  hydra, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245784.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3YDA7, Q9VRB5
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    6. NM_001258852.1 → NP_001245781.1  hydra, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245781.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3YDA7, Q9VRB5
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    7. NM_001258856.1 → NP_001245785.1  hydra, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3YDA7, Q9VRB5
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)

    8. NM_167711.3 → NP_728358.1  hydra, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_728358.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F3YDA7, Q9VRB5
      Related
      FBpp0076987
      Conserved Domains (1) summary
      pfam12302
      Location:28 → 283
      DUF3629; Protein of unknown function (DUF3629)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IQ35 Q8IQ35
    Q9VRB5 Q9VRB5

    Gene LinkOut

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