U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG6118 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41884, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG6118provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038339
    Locus tag
    Dmel_CG6118
    See related
    AllianceGenome:FB:FBgn0038339
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6118
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including dorsal ridge; dorsal ridge primordium; embryonic anal pad; embryonic esophagus; and epithelium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG6118 in Genome Data Viewer
    Location:
    88F4-88F4; 3-57 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15421108..15434738, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11246830..11260460, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45911 Neighboring gene mir-13a stem loop Neighboring gene mir-2c stem loop Neighboring gene Actin 88F Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif A Neighboring gene snoRNA:Orphan H/ACA box 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Effect of heritable symbionts on maternally-derived embryo transcripts. Mateos M, et al. Sci Rep, 2019 Jun 20. PMID 31222094, Free PMC Article
    2. The secreted AdamTS-A metalloprotease is required for collective cell migration. Ismat A, et al. Development, 2013 May. PMID 23536567, Free PMC Article
    3. Defensive repertoire of Drosophila larvae in response to toxic fungi. Trienens M, et al. Mol Ecol, 2017 Oct. PMID 28746736
    4. The Drosophila Pipsqueak protein defines a new family of helix-turn-helix DNA-binding proteins. Siegmund T, et al. Dev Genes Evol, 2002 Apr. PMID 11976954
    5. Golgi-Resident Gαo Promotes Protrusive Membrane Dynamics. Solis GP, et al. Cell, 2017 Aug 24. PMID 28803726

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG6118-PB
    CG6118-PC
    CG6118-PD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      15421108..15434738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142210.2 → NP_650467.2  uncharacterized protein Dmel_CG6118, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650467.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0C4DHB3, Q4V732
      Conserved Domains (3) summary
      smart00225
      Location:419 → 501
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:408 → 501
      BTB; BTB/POZ domain
      pfam13837
      Location:20 → 97
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. NM_001104336.2 → NP_001097806.1  uncharacterized protein Dmel_CG6118, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097806.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JR16, Q4V732
      Conserved Domains (3) summary
      smart00225
      Location:419 → 510
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:408 → 508
      BTB; BTB/POZ domain
      pfam13837
      Location:20 → 97
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. NM_001104335.2 → NP_001097805.1  uncharacterized protein Dmel_CG6118, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097805.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JR17, Q4V732
      Conserved Domains (2) summary
      smart00225
      Location:335 → 426
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:324 → 424
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0C4DHB3 A0A0C4DHB3
    A8JR16 A8JR16
    A8JR17 A8JR17

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools