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    B9d1 B9d1 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41888, updated on 9-Dec-2024

    Summary

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    Official Symbol
    B9d1provided by FlyBase
    Official Full Name
    B9d1provided by FlyBase
    Primary source
    FLYBASE:FBgn0038342
    Locus tag
    Dmel_CG14870
    See related
    AllianceGenome:FB:FBgn0038342
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    B9D1; CG14870; Dmel\CG14870
    Summary
    Involved in cilium assembly. Located in ciliary transition zone. Is expressed in eo neurons. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

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    See B9d1 in Genome Data Viewer
    Location:
    88F6-88F6; 3-57 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15481906..15482904)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11307628..11308626)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Actin 88F Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif A Neighboring gene snoRNA:Orphan H/ACA box 9 Neighboring gene trissin Neighboring gene Rhodopsin 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Katanin p60-like 1 sculpts the cytoskeleton in mechanosensory cilia. Sun L, et al. J Cell Biol, 2021 Jan 4. PMID 33263729, Free PMC Article
    2. Transition zone assembly and its contribution to axoneme formation in Drosophila male germ cells. Vieillard J, et al. J Cell Biol, 2016 Sep 26. PMID 27646273, Free PMC Article
    3. Drosophila sensory cilia lacking MKS proteins exhibit striking defects in development but only subtle defects in adults. Pratt MB, et al. J Cell Sci, 2016 Oct 15. PMID 27577095, Free PMC Article
    4. Feedback from rhodopsin controls rhodopsin exclusion in Drosophila photoreceptors. Vasiliauskas D, et al. Nature, 2011 Oct 9. PMID 21983964, Free PMC Article
    5. Drosophila chibby is required for basal body formation and ciliogenesis but not for Wg signaling. Enjolras C, et al. J Cell Biol, 2012 Apr 16. PMID 22508513, Free PMC Article

    See all (35) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cilium assembly IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cilium assembly ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MKS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of MKS complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in ciliary transition zone IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B9d1
    Names
    B9d1-PA
    CG14870-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      15481906..15482904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142213.2 → NP_650470.1  B9d1 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650470.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VF59
      Related
      FBpp0082599
      Conserved Domains (1) summary
      pfam07162
      Location:61 → 226
      B9-C2; Ciliary basal body-associated, B9 protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VF59.1 Q9VF59

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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