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    Vti1b Vesicle transport through interaction with t-SNAREs 1b [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42215, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Vti1bprovided by FlyBase
    Official Full Name
    Vesicle transport through interaction with t-SNAREs 1bprovided by FlyBase
    Primary source
    FLYBASE:FBgn0264751
    Locus tag
    Dmel_CG44009
    See related
    AllianceGenome:FB:FBgn0264751
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG31232; CG44009; CG7682; Dmel\CG44009; EP(3)1037
    Summary
    Predicted to enable SNAP receptor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in Golgi apparatus. Predicted to be part of SNARE complex. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Vti1b in Genome Data Viewer
    Location:
    91A5-91A5; 3-63 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (18396995..18400339)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (14222717..14226061)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Vacuolar H[+] ATPase 100kD subunit 4 Neighboring gene corona Neighboring gene Vacuolar H[+] ATPase 100kD subunit 2 Neighboring gene WD repeat domain 37 Neighboring gene kokopelli

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNAREing the basis of multicellularity: consequences of protein family expansion during evolution. Kloepper TH, et al. Mol Biol Evol, 2008 Sep. PMID 18621745
    2. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Jin W, et al. Nat Genet, 2001 Dec. PMID 11726925
    3. A misexpression study examining dorsal thorax formation in Drosophila melanogaster. Peña-Rangel MT, et al. Genetics, 2002 Mar. PMID 11901120, Free PMC Article
    4. Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates. Olson JM, et al. G3 (Bethesda), 2019 Nov 5. PMID 31690598, Free PMC Article
    5. A Drosophila protein-interaction map centered on cell-cycle regulators. Stanyon CA, et al. Genome Biol, 2004. PMID 15575970, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables SNAP receptor activity ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport ISM
    Inferred from Sequence Model
    more info
    		  
    involved_in vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of SNARE complex ISM
    Inferred from Sequence Model
    more info
    		  
    part_of SNARE complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    vesicle transport through interaction with t-SNAREs 1b
    Names
    CG44009-PA
    CG44009-PB
    Vti1b-PA
    Vti1b-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      18396995..18400339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275780.1 → NP_001262709.1  vesicle transport through interaction with t-SNAREs 1b, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262709.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KHQ5
      Conserved Domains (1) summary
      cl22856
      Location:1 → 39
      SNARE; SNARE motif

    2. NM_001144603.2 → NP_001138075.1  vesicle transport through interaction with t-SNAREs 1b, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001138075.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z0M0, C6TP30
      Conserved Domains (1) summary
      cd15890
      Location:27 → 88
      SNARE_Vti1b; SNARE motif of Vti1b-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KHQ5 A0A0B4KHQ5
    B7Z0M0 B7Z0M0

    Gene LinkOut

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