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    CG11417 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31083, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11417provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0024364
    Locus tag
    Dmel_CG11417
    See related
    AllianceGenome:FB:FBgn0024364
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11417; EG:8D8.4
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleus. Is expressed in several structures, including anterior endoderm; embryonic/larval midgut primordium; gut section; larval muscle cell; and mesoderm. Orthologous to human ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11417 in Genome Data Viewer
    Location:
    1F4-1F4; 1-0.1 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1354014..1356473)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1248047..1250506)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene mitochondrial poly(A) polymerase Neighboring gene Tetraspanin 2A Neighboring gene uncharacterized protein Neighboring gene pan gu Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. Tiwari P, et al. PLoS One, 2015. PMID 26488612, Free PMC Article
    2. Hrp59, an hnRNP M protein in Chironomus and Drosophila, binds to exonic splicing enhancers and is required for expression of a subset of mRNAs. Kiesler E, et al. J Cell Biol, 2005 Mar 28. PMID 15781475, Free PMC Article
    3. Proximity labeling reveals novel interactomes in live Drosophila tissue. Mannix KM, et al. Development, 2019 Jul 18. PMID 31208963, Free PMC Article
    4. Dynamics of Dark-Fly Genome Under Environmental Selections. Izutsu M, et al. G3 (Bethesda), 2015 Dec 4. PMID 26637434, Free PMC Article
    5. Neutral Competition for Drosophila Follicle and Cyst Stem Cell Niches Requires Vesicle Trafficking Genes. Cook MS, et al. Genetics, 2017 Jul. PMID 28512187, Free PMC Article

    See all (34) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11417-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1354014..1356473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130550.3 → NP_569906.1  uncharacterized protein Dmel_CG11417 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_569906.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O46307, Q8MR29
      Related
      FBpp0070205
      Conserved Domains (2) summary
      COG5638
      Location:44 → 763
      COG5638; Uncharacterized conserved protein [Function unknown]
      pfam08159
      Location:683 → 711
      NUC153; NUC153 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O46307 O46307
    Q8MR29 Q8MR29

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
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