U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG31342 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41592, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG31342provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0051342
    Locus tag
    Dmel_CG31342
    See related
    AllianceGenome:FB:FBgn0051342
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG18551; CG7472; Dmel\CG31342
    Summary
    Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SDCBP (syndecan binding protein) and SDCBP2 (syndecan binding protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG31342 in Genome Data Viewer
    Location:
    87D7-87D7; 3-53 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12986041..12991543)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8811763..8817265)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene polyA-binding protein interacting protein 2 Neighboring gene uncharacterized protein Neighboring gene yellow-f Neighboring gene yellow-f2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome-scale analysis of positionally relocated genes. Bhutkar A, et al. Genome Res, 2007 Dec. PMID 17989252, Free PMC Article
    2. Combining mapping and arraying: An approach to candidate gene identification. Wayne ML, et al. Proc Natl Acad Sci U S A, 2002 Nov 12. PMID 12415114, Free PMC Article
    3. In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry. Rees JS, et al. Mol Cell Proteomics, 2011 Jun. PMID 21447707, Free PMC Article
    4. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
    5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG31342-PB
    CG31342-PC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      12986041..12991543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001104294.3 → NP_001097764.1  uncharacterized protein Dmel_CG31342, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097764.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JQZ0
      Conserved Domains (1) summary
      PHA03247
      Location:607 → 785
      PHA03247; large tegument protein UL36; Provisional

    2. NM_001104293.2 → NP_001097763.1  uncharacterized protein Dmel_CG31342, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097763.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JQY9, Q86NY5
      Conserved Domains (1) summary
      smart00228
      Location:886 → 973
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8JQY9 A8JQY9
    A8JQZ0 A8JQZ0
    Q86NW4 Q86NW4
    Q86NY5 Q86NY5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools