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    atlas atlas [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37689, updated on 9-Dec-2024

    Summary

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    Official Symbol
    atlasprovided by FlyBase
    Official Full Name
    atlasprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034841
    Locus tag
    Dmel_CG13541
    See related
    AllianceGenome:FB:FBgn0034841
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    atl; CG13541; Dmel\CG13541
    Summary
    Involved in sperm DNA condensation. Is active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See atlas in Genome Data Viewer
    Location:
    59D4-59D5; 2-102 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23284227..23285821)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19171750..19173344)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene orientation disruptor Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44783 Neighboring gene Proteasome beta5 subunit-related 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heterologous expression of naturally evolved putative de novo proteins with chaperones. Eicholt LA, et al. Protein Sci, 2022 Aug. PMID 35900020, Free PMC Article
    2. Ocnus is essential for male germ cell development in Drosophila melanogaster. Zheng Y, et al. Insect Mol Biol, 2018 Oct. PMID 29732657
    3. A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. Rivard EL, et al. PLoS Genet, 2021 Sep. PMID 34478447, Free PMC Article
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in sperm DNA condensation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    atlas
    Names
    CG13541-PA
    CG13541-PB
    atlas-PA
    atlas-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      23284227..23285821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299833.1 → NP_001286762.1  atlas, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286762.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1S6

    2. NM_137931.3 → NP_611775.1  atlas, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611775.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1S6
      Related
      FBpp0071910
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W1S6 Q9W1S6

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