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    lncRNA:CR42839 long non-coding RNA:CR42839 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178956, updated on 11-Sep-2024

    Summary

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    Official Symbol
    lncRNA:CR42839provided by FlyBase
    Official Full Name
    long non-coding RNA:CR42839provided by FlyBase
    Primary source
    FLYBASE:FBgn0262028
    Locus tag
    Dmel_CR42839
    See related
    AllianceGenome:FB:FBgn0262028
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR42839; Dmel\CR42839
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    Genomic context

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    See lncRNA:CR42839 in Genome Data Viewer
    Location:
    89A12-89A12; 3-58 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16004321..16008073, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11830043..11833795, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Helicase 89B Neighboring gene long non-coding RNA:CR44133 Neighboring gene serpent Neighboring gene GATAe Neighboring gene pannier

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
    2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    3. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
    4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • lncRNA:CR42839-RA; Dmel\lncRNA:CR42839-RA; CR42839-RA; Dmel\CR42839-RA
    • lncRNA:CR42839-RB; Dmel\lncRNA:CR42839-RB; CR42839-RB; Dmel\CR42839-RB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      16004321..16008073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_048407.1 RNA Sequence

      Status: REVIEWED

    2. NR_037761.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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