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    6430571L13Rik RIKEN cDNA 6430571L13 gene [ Mus musculus (house mouse) ]

    Gene ID: 235599, updated on 9-Dec-2024

    Summary

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    Official Symbol
    6430571L13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6430571L13 geneprovided by MGI
    Primary source
    MGI:MGI:2445137
    See related
    Ensembl:ENSMUSG00000037977 AllianceGenome:MGI:2445137
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Orthologous to human C3orf18 (chromosome 3 open reading frame 18). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 12.0), frontal lobe adult (RPKM 6.6) and 12 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 6430571L13Rik in Genome Data Viewer
    Location:
    9 F1; 9 58.0 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (107217839..107226882)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (107340640..107349683)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr9:107198795-107199096 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:107215338-107215525 Neighboring gene cytokine inducible SH2-containing protein Neighboring gene STARR-seq mESC enhancer starr_25171 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:107240678-107240861 Neighboring gene STARR-positive B cell enhancer ABC_E6801 Neighboring gene RIKEN cDNA 4930429P21 gene Neighboring gene HemK methyltransferase family member 1 Neighboring gene STARR-seq mESC enhancer starr_25172 Neighboring gene STARR-seq mESC enhancer starr_25173 Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 2 Neighboring gene predicted gene 17141 Neighboring gene predicted gene, 34037

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C3orf18 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433783.1 → NP_001420712.1  uncharacterized protein C3orf18 homolog

      Status: VALIDATED

      Source sequence(s)
      AL672070
      UniProtKB/Swiss-Prot
      Q8BGK9, Q8BUH0
      UniProtKB/TrEMBL
      Q14AT3

    2. NM_175486.4 → NP_780695.1  uncharacterized protein C3orf18 homolog

      Status: VALIDATED

      Source sequence(s)
      AL672070
      Consensus CDS
      CCDS23489.1
      UniProtKB/Swiss-Prot
      Q8BGK9, Q8BUH0
      UniProtKB/TrEMBL
      Q14AT3
      Related
      ENSMUSP00000047093.3, ENSMUST00000042581.4

    RNA

    1. NR_197596.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL672070

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      107217839..107226882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BGK9.1 GenPept UniProtKB/Swiss-Prot:Q8BGK9

    Gene LinkOut

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