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    YLS5 Class I glutamine amidotransferase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818470, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YLS5
    Official Full Name
    Class I glutamine amidotransferase-like superfamily protein
    Primary source
    TAIR:AT2G38860
    Locus tag
    AT2G38860
    See related
    Araport:AT2G38860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DJ-1e; DJ1E; T7F6.3; T7F6_3
    Summary
    Encodes protease I (pfpI)-like protein YLS5.
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    Genomic context

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    See YLS5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (16232859..16235367, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin-conjugating enzyme/RWD-like protein Neighboring gene Guanylate-binding family protein Neighboring gene Serine protease inhibitor, potato inhibitor I-type family protein Neighboring gene nuclear factor Y, subunit B1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel glyoxalases from Arabidopsis thaliana. Kwon K, et al. FEBS J, 2013 Jul. PMID 23651081
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125001.1
    NM_129443.2
    NM_179972.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lactoylglutathione lyase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Class I glutamine amidotransferase-like superfamily protein
    NP_001118473.1
    • YLS5; INVOLVED IN: response to ethylene stimulus, response to salt stress, leaf senescence, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT3G54600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_030434.1
    • YLS5; INVOLVED IN: response to ethylene stimulus, response to salt stress, leaf senescence, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT3G54600.1); Has 6230 Blast hits to 3821 proteins in 1388 species: Archae - 322; Bacteria - 5394; Metazoa - 98; Fungi - 11; Plants - 150; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).
    NP_850303.1
    • YLS5; INVOLVED IN: response to ethylene stimulus, response to salt stress, leaf senescence, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT3G54600.1); Has 5894 Blast hits to 3594 proteins in 1340 species: Archae - 316; Bacteria - 5148; Metazoa - 32; Fungi - 11; Plants - 140; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16232859..16235367 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179972.3 → NP_850303.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S8L7, Q9ZV19
      UniProtKB/TrEMBL
      A0A178W293, A0A5S9X572, A0A654F034
      Conserved Domains (1) summary
      cd03169
      Location:211 → 392
      GATase1_PfpI_1; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

    2. NM_129443.2 → NP_030434.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W293
      Conserved Domains (3) summary
      cd03169
      Location:202 → 383
      GATase1_PfpI_1; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus
      COG0693
      Location:7 → 192
      ThiJ; Putative intracellular protease/amidase [General function prediction only]
      cl00020
      Location:10 → 189
      GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain

    3. NM_001125001.1 → NP_001118473.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H6C6
      Conserved Domains (3) summary
      cd03169
      Location:10 → 198
      GATase1_PfpI_1; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus
      COG0693
      Location:7 → 201
      ThiJ; Putative intracellular protease/amidase [General function prediction only]
      cl00020
      Location:211 → 242
      GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZV19.1

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