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    SNR33 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164874, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR33
    Primary source
    SGD:S000007298
    Locus tag
    YNCC0006C
    See related
    AllianceGenome:SGD:S000007298
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR33 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_001135.5 (142364..142546, complement)

    Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene DNA-directed DNA polymerase IV Neighboring gene Cto1p Neighboring gene tRNA-Gly Neighboring gene RNA-binding ribosome assembly factor RBP95

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001135.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SnR31, snR32, and snR33: three novel, non-essential snRNAs from Saccharomyces cerevisiae. Balakin AG, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265354, Free PMC Article
    2. Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination. Hazelbaker DZ, et al. Mol Cell, 2013 Jan 10. PMID 23177741, Free PMC Article
    3. Characterization of three new snRNAs from Saccharomyces cerevisiae: snR34, snR35 and snR36. Samarsky DA, et al. Nucleic Acids Res, 1995 Jul 11. PMID 7630735, Free PMC Article
    4. Cell-Cycle Modulation of Transcription Termination Factor Sen1. Mischo HE, et al. Mol Cell, 2018 Apr 19. PMID 29656924, Free PMC Article
    5. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Lafontaine DL, et al. Genes Dev, 1998 Feb 15. PMID 9472021, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U1042

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA pseudouridylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001135.5 Reference assembly

      Range
      142364..142546 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132156.1 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

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