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    cone-1 Protein CASP [ Caenorhabditis elegans ]

    Gene ID: 175372, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cone-1
    Official Full Name
    Protein CASP
    Primary source
    WormBase:WBGene00306126
    Locus tag
    CELE_Y54F10AM.16
    See related
    AllianceGenome:WB:WBGene00306126
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cone-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    12
    Sequence:
    Chromosome: III; NC_003281.10 (2530620..2546421)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene WD_REPEATS_REGION domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 Neighboring gene Homeobox protein cut-like ceh-44 Neighboring gene ncRNA Neighboring gene Amyloid beta A4 precursor protein-binding family B member 2-like;Protein Fe65 homolog Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C30F12.4 influences oogenesis, fat metabolism, and lifespan in C. elegans. Wang L, et al. Protein Cell, 2016 Oct. PMID 27638466, Free PMC Article
    2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
    3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein CASP
    NP_497575.2
    • Confirmed by transcript evidence
    NP_497577.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      2530620..2546421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065174.9 → NP_497575.2  Protein CASP [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497575.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IA98
      Conserved Domains (2) summary
      pfam05087
      Location:122 → 231
      Rota_VP2; Rotavirus VP2 protein
      pfam08172
      Location:411 → 590
      CASP_C; CASP C terminal

    2. NM_065176.7 → NP_497577.2  Protein CASP [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497577.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IA98, Q9BL01
      Conserved Domains (2) summary
      pfam05087
      Location:122 → 231
      Rota_VP2; Rotavirus VP2 protein
      pfam08172
      Location:411 → 592
      CASP_C; CASP C terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IA98.1

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