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    R10E4.9 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [ Caenorhabditis elegans ]

    Gene ID: 187773, updated on 2-Nov-2024

    Summary

    Official Symbol
    R10E4.9
    Official Full Name
    Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
    Primary source
    WormBase:WBGene00011205
    Locus tag
    CELE_R10E4.9
    See related
    AllianceGenome:WB:WBGene00011205
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Located in plasma membrane. Orthologous to human HACD3 (3-hydroxyacyl-CoA dehydratase 3). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See R10E4.9 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (4301620..4302393, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Endonuclease III homolog Neighboring gene DUF1996 domain-containing protein Neighboring gene GP-PDE domain-containing protein Neighboring gene C2H2-type domain-containing protein Neighboring gene Cnd1 domain-containing protein Neighboring gene Defective in cullin neddylation protein 1 Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydratase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in fatty acid elongation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sphingolipid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in very long-chain fatty acid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane HDA PubMed 

    General protein information

    Preferred Names
    Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
    NP_497864.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      4301620..4302393 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065463.2NP_497864.1  Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497864.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21905
      Conserved Domains (1) summary
      cl02156
      Location:50148
      PTPLA; Protein tyrosine phosphatase-like protein, PTPLA