U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Y60A3A.19 Protein YIPF [ Caenorhabditis elegans ]

    Gene ID: 180305, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Y60A3A.19
    Official Full Name
    Protein YIPF
    Primary source
    WormBase:WBGene00013365
    Locus tag
    CELE_Y60A3A.19
    See related
    AllianceGenome:WB:WBGene00013365
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF4 (Yip1 domain family member 4). [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Y60A3A.19 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (19916555..19920001)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene FDX-ACB domain-containing protein;phenylalanine--tRNA ligase Neighboring gene ncRNA Neighboring gene Serine/threonine-protein kinase chk-2 Neighboring gene KA1 domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle fusion with Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Protein YIPF
    NP_001123056.1
    • Confirmed by transcript evidence
    NP_001370244.1
    • Confirmed by transcript evidence
    NP_507855.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19916555..19920001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383502.2 → NP_001370244.1  Protein YIPF [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B1GRN9

    2. NM_075454.8 → NP_507855.2  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507855.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U1Y7, Q9U1Y8
      Conserved Domains (1) summary
      pfam04893
      Location:123 → 198
      Yip1; Yip1 domain

    3. NM_001129584.2 → NP_001123056.1  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123056.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5PEX8
      Conserved Domains (1) summary
      cl21557
      Location:73 → 249
      Yip1; Yip1 domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools