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    F35G12.12 26S proteasome non-ATPase regulatory subunit 5 [ Caenorhabditis elegans ]

    Gene ID: 175601, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F35G12.12
    Official Full Name
    26S proteasome non-ATPase regulatory subunit 5
    Primary source
    WormBase:WBGene00009445
    Locus tag
    CELE_F35G12.12
    See related
    AllianceGenome:WB:WBGene00009445
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in proteasome assembly. Predicted to be part of proteasome complex. Is expressed in intestine. Orthologous to human PSMD5 (proteasome 26S subunit, non-ATPase 5). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F35G12.12 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    10
    Sequence:
    Chromosome: III; NC_003281.10 (4581795..4583893)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Serine/threonine-protein kinase sel-5 Neighboring gene WD repeat-containing protein 48 homolog Neighboring gene GUN4 domain-containing protein;Ras-associating domain-containing protein;SPK domain-containing protein Neighboring gene Divalent-cation tolerance protein CutA Neighboring gene Structural maintenance of chromosomes protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. Davy A, et al. EMBO Rep, 2001 Sep. PMID 11559592, Free PMC Article
    2. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Walhout AJ, et al. Curr Biol, 2002 Nov 19. PMID 12445390
    3. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    4. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    5. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 5
    NP_497932.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      4581795..4583893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065531.8 → NP_497932.2  26S proteasome non-ATPase regulatory subunit 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497932.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20058
      Conserved Domains (1) summary
      pfam10508
      Location:11 → 484
      Proteasom_PSMB; Proteasome non-ATPase 26S subunit
    Nucleotide Protein
    Heading Accession and Version

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