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    wht-7 ABC transporter domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175864, updated on 2-Nov-2024

    Summary

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    Official Symbol
    wht-7
    Official Full Name
    ABC transporter domain-containing protein
    Primary source
    WormBase:WBGene00021535
    Locus tag
    CELE_Y42G9A.6
    See related
    AllianceGenome:WB:WBGene00021535
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See wht-7 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    11
    Sequence:
    Chromosome: III; NC_003281.10 (6141957..6149597, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Glycylpeptide N-tetradecanoyltransferase;putative glycylpeptide N-tetradecanoyltransferase Neighboring gene Serine/threonine-protein kinase SULU Neighboring gene GHMP kinase C-terminal domain-containing protein;MeValonate Kinase;Mevalonate kinase Neighboring gene L domain-like protein;Leucine-rich repeat-containing protein 58 Neighboring gene Secreted protein Neighboring gene ncRNA Neighboring gene Nbl1_Borealin_N domain-containing protein Neighboring gene ncRNA Neighboring gene Nicotinamide N-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Asymmetric organelle positioning during epithelial polarization of C. elegans intestinal cells. Brandt JN, et al. Dev Biol, 2022 Jan. PMID 34597675, Free PMC Article
    2. ATP-binding cassette transporters are required for efficient RNA interference in Caenorhabditis elegans. Sundaram P, et al. Mol Biol Cell, 2006 Aug. PMID 16723499, Free PMC Article
    3. Caenorhabditis elegans ABCRNAi transporters interact genetically with rde-2 and mut-7. Sundaram P, et al. Genetics, 2008 Feb. PMID 18245353, Free PMC Article
    4. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ABC transporter domain-containing protein
    NP_001367851.1
    • Confirmed by transcript evidence
    NP_001367852.1
    • Confirmed by transcript evidence
    NP_001391160.1
    • Confirmed by transcript evidence
    NP_001391161.1
    • Confirmed by transcript evidence
    NP_001391162.1
    • Confirmed by transcript evidence
    NP_001391163.1
    • Confirmed by transcript evidence
    NP_001391164.1
    • Confirmed by transcript evidence
    NP_001391165.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6141957..6149597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001404163.1 → NP_001391163.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QFC8

    2. NM_001379747.1 → NP_001367851.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L028
      Conserved Domains (1) summary
      TIGR00955
      Location:40 → 664
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

    3. NM_001404160.1 → NP_001391160.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QGL9

    4. NM_001404161.1 → NP_001391161.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4Q9J2

    5. NM_001404162.1 → NP_001391162.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QAZ9

    6. NM_001404164.1 → NP_001391164.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QD72

    7. NM_001379748.1 → NP_001367852.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A9R9
      Conserved Domains (1) summary
      TIGR00955
      Location:1 → 527
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

    8. NM_001404165.1 → NP_001391165.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QBW8
    Nucleotide Protein
    Heading Accession and Version

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