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    R10E4.11 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175554, updated on 2-Nov-2024

    Summary

    Official Symbol
    R10E4.11
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00011206
    Locus tag
    CELE_R10E4.11
    See related
    AllianceGenome:WB:WBGene00011206
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See R10E4.11 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (4296517..4301039, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene DNA replication licensing factor mcm-5 Neighboring gene Endonuclease III homolog Neighboring gene DUF1996 domain-containing protein Neighboring gene GP-PDE domain-containing protein Neighboring gene Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase Neighboring gene Cnd1 domain-containing protein

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables chromatin insulator sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in chromosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    C2H2-type domain-containing protein
    NP_001254910.1
    • Confirmed by transcript evidence
    NP_001254911.1
    • Confirmed by transcript evidence
    NP_001254912.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      4296517..4301039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001267981.5NP_001254910.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254910.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21907
      Conserved Domains (1) summary
      cd20908
      Location:227277
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
    2. NM_001267982.3NP_001254911.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254911.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D5MCP7
    3. NM_001267983.3NP_001254912.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254912.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D5MCP8