gldi-11 Ribosomal RNA-processing protein 14/surfeit locus protein 6 C-terminal domain-containing protein;SURF6 homolog gldi-11 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: gldi-11
Official Full Name: Ribosomal RNA-processing protein 14/surfeit locus protein 6 C-terminal domain-containing protein;SURF6 homolog gldi-11
Primary source: WormBase:WBGene00022765
Locus tag: CELE_ZK546.14
See related: AllianceGenome:WB:WBGene00022765
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in ribosomal large subunit biogenesis and ribosomal small subunit biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human SURF6 (surfeit 6). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See gldi-11 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 5

Sequence:: Chromosome: II; NC_003280.10 (4944044..4945789, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

ZK546.16 (e-PCR)
- UniSTS:321107

ZK546.14 (e-PCR)
- UniSTS:310507

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in ribosomal large subunit biogenesis	IBA Inferred from Biological aspect of Ancestor more info
involved_in ribosomal small subunit biogenesis	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Ribosomal RNA-processing protein 14/surfeit locus protein 6 C-terminal domain-containing protein;SURF6 homolog gldi-11

NP_001380032.1

Confirmed by transcript evidence

NP_494907.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

4944044..4945789 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_062506.6 → NP_494907.1 SURF6 homolog gldi-11 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_494907.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q23525

Conserved Domains (2) summary

PTZ00121
Location:34 → 468

PTZ00121; MAEBL; Provisional

pfam04935
Location:271 → 463

SURF6; Surfeit locus protein 6
NM_001393056.1 → NP_001380032.1 Ribosomal RNA-processing protein 14/surfeit locus protein 6 C-terminal domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

G8JYE5

Conserved Domains (2) summary

PTZ00121
Location:16 → 450

PTZ00121; MAEBL; Provisional

pfam04935
Location:245 → 445

SURF6; Surfeit locus protein 6