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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001029868.2 → NP_001025039.1 PDZ domain-containing protein 4 isoform 1
See identical proteins and their annotated locations for NP_001025039.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AL672094, BC056462
- Consensus CDS
-
CCDS30214.1
- UniProtKB/Swiss-Prot
- A2AFG4, Q6PHP2, Q9QY39
- Related
- ENSMUSP00000002080.6, ENSMUST00000002080.12
- Conserved Domains (1) summary
-
- cd00992
Location:136 → 218
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_001290540.1 → NP_001277469.1 PDZ domain-containing protein 4 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks two alternate in-frame exons, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AK046101, AL672094, BC056462
- Consensus CDS
-
CCDS72393.1
- UniProtKB/TrEMBL
-
A2AFG3
- Related
- ENSMUSP00000110081.3, ENSMUST00000114438.3
- Conserved Domains (1) summary
-
- cd00992
Location:19 → 103
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000086.8 Reference GRCm39 C57BL/6J
- Range
-
72836963..72868649 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006528017.4 → XP_006528080.1 PDZ domain-containing protein 4 isoform X1
-
XM_036161954.1 → XP_036017847.1 PDZ domain-containing protein 4 isoform X3
-
XM_006528022.5 → XP_006528085.1 PDZ domain-containing protein 4 isoform X5
-
XM_006528021.5 → XP_006528084.1 PDZ domain-containing protein 4 isoform X4
- Conserved Domains (1) summary
-
- pfam17820
Location:20 → 71
- PDZ_6; PDZ domain
-
XM_006528020.2 → XP_006528083.1 PDZ domain-containing protein 4 isoform X2
- Conserved Domains (1) summary
-
- cd00992
Location:18 → 100
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...