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    CG42259 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 7354475, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42259provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0266569
    Locus tag
    Dmel_CG42259
    See related
    AllianceGenome:FB:FBgn0266569
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-1Ea; C; Dmel\CG42259
    Summary
    Predicted to enable protein homodimerization activity. Involved in response to wounding. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG42259 in Genome Data Viewer
    Location:
    1E1-1E1; 1-0.1 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1046224..1047009)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (940257..941042)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene suppressor of white-apricot Neighboring gene uncharacterized protein Neighboring gene Cell division cycle 45 Neighboring gene Ribonuclease P/MRP subunit p21 Neighboring gene long non-coding RNA:CR44779 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and genetic analysis of the suppressor-of-white-apricot locus from Drosophila melanogaster. Zachar Z, et al. Mol Cell Biol, 1987 Jul. PMID 3039348, Free PMC Article
    2. A single-cell survey of Drosophila blood. Tattikota SG, et al. Elife, 2020 May 12. PMID 32396065, Free PMC Article
    3. Research gaps and new insights in the evolution of Drosophila seminal fluid proteins. Hurtado J, et al. Insect Mol Biol, 2022 Apr. PMID 34747062
    4. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Li H, et al. DNA Res, 2016 Dec. PMID 27559081, Free PMC Article
    5. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in hemolymph coagulation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42259-PA
    CG42259-PB
    anon-1Ea
    transcription unit C

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1046224..1047009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001042791.3 → NP_001036256.2  uncharacterized protein Dmel_CG42259, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036256.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0KHX4
      Conserved Domains (1) summary
      pfam01826
      Location:30 → 85
      TIL; Trypsin Inhibitor like cysteine rich domain

    2. NM_001258530.1 → NP_001245459.1  uncharacterized protein Dmel_CG42259, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245459.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0KHX4
      Conserved Domains (1) summary
      pfam01826
      Location:30 → 85
      TIL; Trypsin Inhibitor like cysteine rich domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0KHX4 Q0KHX4

    Gene LinkOut

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