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    CG3253 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37861, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3253provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0041706
    Locus tag
    Dmel_CG3253
    See related
    AllianceGenome:FB:FBgn0041706
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BEST:GH04269; dibeta3GnT1; Dmel\CG3253
    Summary
    Predicted to enable glucuronosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Orthologous to human B4GAT1 (beta-1,4-glucuronyltransferase 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3253 in Genome Data Viewer
    Location:
    60B10-60B11; 2-106 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (24114398..24116359)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (20001921..20003882)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene enoki mushroom Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene tamo

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A P element has induced intron formation in Drosophila. Nouaud D, et al. Mol Biol Evol, 1999 Nov. PMID 10555281
    2. Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing. Yamamoto-Hino M, et al. Genes Cells, 2015 Jun. PMID 25940448, Free PMC Article
    3. Molecular and comparative genetics of mental retardation. Inlow JK, et al. Genetics, 2004 Feb. PMID 15020472, Free PMC Article
    4. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables glucuronosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glucuronosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glucuronosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein O-linked mannosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein O-linked mannosylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi apparatus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3253-PA
    CG3253-PB
    L-gene
    NP_001246488.1
    NP_611886.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      24114398..24116359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259559.1 → NP_001246488.1  uncharacterized protein Dmel_CG3253, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246488.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1A7
      Conserved Domains (1) summary
      pfam13896
      Location:52 → 371
      Glyco_transf_49; Glycosyl-transferase for dystroglycan

    2. NM_138042.4 → NP_611886.1  uncharacterized protein Dmel_CG3253, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611886.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W1A7
      Related
      FBpp0072160
      Conserved Domains (1) summary
      pfam13896
      Location:52 → 371
      Glyco_transf_49; Glycosyl-transferase for dystroglycan
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W1A7 Q9W1A7

    Gene LinkOut

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