U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG42390 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42600, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG42390provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259736
    Locus tag
    Dmel_CG42390
    See related
    AllianceGenome:FB:FBgn0259736
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG33334; CG5740; Dmel\CG42390
    Old locus tag
    CG5740; Dmel_CG33334; Dmel_CG5740
    Summary
    Predicted to be involved in protein export from nucleus. Is expressed in germline cell and spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG42390 in Genome Data Viewer
    Location:
    94A2-94A2; 3-74 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22120061..22133367)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (17945783..17959089)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ionotropic receptor 94b Neighboring gene Ionotropic receptor 94c Neighboring gene Shal K[+] channel interacting protein Neighboring gene long non-coding RNA:CR45224 Neighboring gene GLD2 poly(A) polymerase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. REPTOR and CREBRF encode key regulators of muscle energy metabolism. Saavedra P, et al. Nat Commun, 2023 Aug 15. PMID 37582831, Free PMC Article
    2. A genomic analysis of Drosophila somatic sexual differentiation and its regulation. Arbeitman MN, et al. Development, 2004 May. PMID 15056610
    3. A genetic screen for suppressors of Drosophila NSF2 neuromuscular junction overgrowth. Laviolette MJ, et al. Genetics, 2005 Jun. PMID 15834148, Free PMC Article
    4. The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan. Webber JL, et al. Genetics, 2013 Feb. PMID 23172856, Free PMC Article
    5. RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1. Jones CI, et al. Nucleic Acids Res, 2016 Jan 8. PMID 26656493, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in protein export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG42390-PB
    CG42390-PD
    CG42390-PE
    CG42390-PF
    CG42390-PG

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22120061..22133367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275896.1 → NP_001262825.1  uncharacterized protein Dmel_CG42390, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VD46
      Conserved Domains (2) summary
      COG1340
      Location:909 → 1214
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam00261
      Location:777 → 1008
      Tropomyosin; Tropomyosin

    2. NM_001382087.1 → NP_001369028.1  uncharacterized protein Dmel_CG42390, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6H2EFV6
      Conserved Domains (1) summary
      COG1196
      Location:760 → 1183
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. NM_169996.2 → NP_732702.3  uncharacterized protein Dmel_CG42390, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732702.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VD46
      Conserved Domains (2) summary
      COG1340
      Location:909 → 1214
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam00261
      Location:777 → 1008
      Tropomyosin; Tropomyosin

    4. NM_206540.2 → NP_996263.2  uncharacterized protein Dmel_CG42390, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996263.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KS66
      Conserved Domains (2) summary
      COG1340
      Location:909 → 1214
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam00261
      Location:777 → 1008
      Tropomyosin; Tropomyosin

    5. NM_001382088.1 → NP_001369029.1  uncharacterized protein Dmel_CG42390, isoform G [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6H2EGE0
      Conserved Domains (1) summary
      COG1196
      Location:760 → 1183
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A6H2EFV6 A0A6H2EFV6
    A0A6H2EGE0 A0A6H2EGE0
    Q7KS66 Q7KS66
    Q960N1 Q960N1
    Q9VD46 Q9VD46

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools