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    Gm16897 predicted gene, 16897 [ Mus musculus (house mouse) ]

    Gene ID: 320400, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm16897provided by MGI
    Official Full Name
    predicted gene, 16897provided by MGI
    Primary source
    MGI:MGI:4439821
    See related
    Ensembl:ENSMUSG00000097325 AllianceGenome:MGI:4439821
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C030002c11rik
    Expression
    Broad expression in bladder adult (RPKM 6.4), subcutaneous fat pad adult (RPKM 4.2) and 24 other tissues See more
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    Genomic context

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    See Gm16897 in Genome Data Viewer
    Location:
    1 H6; 1 98.38 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (194638067..194659267, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (194955759..194976959, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene microRNA 3962 Neighboring gene STARR-positive B cell enhancer mm9_chr1:196705793-196706093 Neighboring gene STARR-seq mESC enhancer starr_03500 Neighboring gene predicted gene, 39748 Neighboring gene CD34 antigen Neighboring gene predicted gene, 53516 Neighboring gene STARR-seq mESC enhancer starr_03501 Neighboring gene STARR-seq mESC enhancer starr_03502 Neighboring gene RIKEN cDNA A330023F24 gene Neighboring gene microRNA 29b-2 Neighboring gene microRNA 29c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033564.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK030377
      Related
      ENSMUST00000180780.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      194638067..194659267 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177154.2: Suppressed sequence

      Description
      NM_177154.2: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein Strain
    Heading Accession and Version

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