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    Muc3a mucin 3A, cell surface associated [ Mus musculus (house mouse) ]

    Gene ID: 619309, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Muc3aprovided by MGI
    Official Full Name
    mucin 3A, cell surface associatedprovided by MGI
    Primary source
    MGI:MGI:3588263
    See related
    AllianceGenome:MGI:3588263
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A630081J09Rik
    Summary
    Predicted to be involved in cell projection morphogenesis. Predicted to be active in synapse. Orthologous to several human genes including MUC3A (mucin 3A, cell surface associated). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human all
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    Genomic context

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    See Muc3a in Genome Data Viewer
    Location:
    5 G2; 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137243263..137276564, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137208805..137212545, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40348 Neighboring gene predicted gene, 31160 Neighboring gene peptidyl-prolyl cis-trans isomerase G-like Neighboring gene predicted gene 42456 Neighboring gene acetylcholinesterase Neighboring gene microRNA 8116

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in cell projection morphogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    mucin-3A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      137243263..137276564 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036165656.1 → XP_036021549.1  mucin-3A isoform X3

      Conserved Domains (3) summary
      COG3889
      Location:144 → 261
      COG3889; Predicted periplasmic protein [Function unknown]
      cd00055
      Location:261 → 293
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam01390
      Location:337 → 419
      SEA; SEA domain

    2. XM_036165655.1 → XP_036021548.1  mucin-3A isoform X2

      Conserved Domains (2) summary
      COG3889
      Location:2442 → 2559
      COG3889; Predicted periplasmic protein [Function unknown]
      cd00055
      Location:2559 → 2591
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...

    3. XM_036165654.1 → XP_036021547.1  mucin-3A isoform X1

      Conserved Domains (4) summary
      PLN02217
      Location:1642 → 1749
      PLN02217; probable pectinesterase/pectinesterase inhibitor
      COG3889
      Location:2442 → 2559
      COG3889; Predicted periplasmic protein [Function unknown]
      cd00055
      Location:2559 → 2591
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam01390
      Location:2635 → 2717
      SEA; SEA domain

    4. XM_036165657.1 → XP_036021550.1  mucin-3A isoform X4

      Conserved Domains (1) summary
      pfam01390
      Location:8 → 90
      SEA; SEA domain

    5. XM_036165658.1 → XP_036021551.1  mucin-3A isoform X5

    RNA

    1. XR_004942657.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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