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    Obp56a Odorant-binding protein 56a [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37264, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Obp56aprovided by FlyBase
    Official Full Name
    Odorant-binding protein 56aprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034468
    Locus tag
    Dmel_CG11797
    See related
    AllianceGenome:FB:FBgn0034468
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    56a; BcDNA:RE46170; CG11797; DmelObp56a; Dmel\CG11797; obp56a; OBP56a
    Summary
    Predicted to enable odorant binding activity. Involved in sensory perception of smell. Predicted to be located in extracellular region. Is expressed in several structures, including clypeo-labral primordium; dorsal epidermis primordium; embryonic epipharynx; epidermis; and sensory nervous system primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Obp56a in Genome Data Viewer
    Location:
    56E2-56E2; 2-90 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (19697723..19698508)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (15585228..15586013)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44506 Neighboring gene Odorant-binding protein 56b Neighboring gene Odorant-binding protein 56c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evaluation of the role of functional constraints on the integrity of an ultraconserved region in the genus Drosophila. Díaz-Castillo C, et al. PLoS Genet, 2012 Feb. PMID 22319453, Free PMC Article
    2. Novel odorant-binding proteins expressed in the taste tissue of the fly. Koganezawa M, et al. Chem Senses, 2002 May. PMID 12006372
    3. The invertebrate odorant-binding protein LUSH is required for normal olfactory behavior in Drosophila. Kim MS, et al. Chem Senses, 2001 Feb. PMID 11238251
    4. Decreased cerebral Irp-1B limits impact of social isolation in wild type and Alzheimer's disease modeled in Drosophila melanogaster. Ruland C, et al. Genes Brain Behav, 2018 Jun. PMID 29251829
    5. Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in the Drosophila Genus. Pal S, et al. J Comput Biol, 2023 Jan. PMID 36037023, Free PMC Article

    See all (71) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables odorant binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in olfactory behavior ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in response to pheromone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sensory perception of smell IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Odorant-binding protein 56a
    Names
    CG11797-PA
    Obp56a-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      19697723..19698508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137598.3 → NP_611442.1  Odorant-binding protein 56a [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611442.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A9QH77, A9QH80, A9QH86, A9QH94, A9QHB8, Q9V8Y2
      UniProtKB/TrEMBL
      A0A1B2AKN7
      Related
      FBpp0085672
      Conserved Domains (1) summary
      pfam01395
      Location:24 → 128
      PBP_GOBP; PBP/GOBP family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9V8Y2.1 Q9V8Y2

    Gene LinkOut

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