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    TfIIEalpha transcription factor IIEalpha [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1276961, updated on 22-Jun-2024

    Summary

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    Gene symbol
    TfIIEalpha
    Gene description
    transcription factor IIEalpha
    See related
    VectorBase:AGAMI1_012547
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP006355
    Orthologs
    fruit fly all
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    Genomic context

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    See TfIIEalpha in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (99309991..99312066)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily KQT member 5 Neighboring gene zwei Ig domain protein zig-8 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene rab-like protein 3 Neighboring gene proline-rich protein PRCC Neighboring gene DDB1- and CUL4-associated factor 8 Neighboring gene histidine triad nucleotide binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription open complex formation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor IIE subunit 1
    Names
    AGAP006355-PA
    transcription initiation factor TFIIE subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      99309991..99312066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_557018.4 → XP_557018.3  general transcription factor IIE subunit 1

      See identical proteins and their annotated locations for XP_557018.3

      UniProtKB/TrEMBL
      Q5TR07
      Conserved Domains (2) summary
      smart00531
      Location:28 → 174
      TFIIE; Transcription initiation factor IIE
      pfam11521
      Location:383 → 434
      TFIIE-A_C; C-terminal general transcription factor TFIIE alpha
    Nucleotide Protein Strain
    Heading Accession and Version

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