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    Sf3b3 splicing factor 3B subunit 3 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1276233, updated on 22-Jun-2024

    Summary

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    Gene symbol
    Sf3b3
    Gene description
    splicing factor 3B subunit 3
    See related
    VectorBase:AGAMI1_006597
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP005549
    Orthologs
    fruit fly all
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    Genomic context

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    See Sf3b3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (85860080..85868867)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene protein lethal(2)essential for life Neighboring gene protein lethal(2)essential for life Neighboring gene Transmembrane protein Pmi Neighboring gene Rabaptin-5-associated exchange factor for Rab5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U2 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 3B subunit 3
    Names
    AGAP005549-PA
    Pre-mRNA-splicing factor rse1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      85860080..85868867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061648604.1 → XP_061504588.1  splicing factor 3B subunit 3 isoform X2

    2. XM_061648605.1 → XP_061504589.1  splicing factor 3B subunit 3 isoform X3

    3. XM_315551.4 → XP_315551.1  splicing factor 3B subunit 3 isoform X1

      See identical proteins and their annotated locations for XP_315551.1

      UniProtKB/TrEMBL
      Q7Q722
      Conserved Domains (2) summary
      pfam03178
      Location:864 → 1184
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
    Nucleotide Protein Strain
    Heading Accession and Version

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