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    LOC1271057 E3 ubiquitin-protein ligase RNFT1 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1271057, updated on 22-Jun-2024

    Summary

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    Gene symbol
    LOC1271057
    Gene description
    E3 ubiquitin-protein ligase RNFT1
    See related
    VectorBase:AGAMI1_014362
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP004640
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1271057 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (56942680..56956568)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene serine protease easter Neighboring gene serine protease grass Neighboring gene uncharacterized LOC11175993 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 1 Neighboring gene putative transporter svop-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of ERAD pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNFT1; probable serine/threonine-protein kinase DDB_G0282963
    Names
    AGAP004640-PA
    AGAP004640-PB

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      56942680..56956568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061640932.1 → XP_061496916.1  probable serine/threonine-protein kinase DDB_G0282963 isoform X2

    2. XM_003436832.2 → XP_003436880.2  E3 ubiquitin-protein ligase RNFT1 isoform X1

    3. XM_061640931.1 → XP_061496915.1  E3 ubiquitin-protein ligase RNFT1 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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