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    ich zinc finger protein ichor [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1272965, updated on 7-Jul-2024

    Summary

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    Gene symbol
    ich
    Gene description
    zinc finger protein ichor
    See related
    VectorBase:AGAMI1_013785
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP002993
    Orthologs
    fruit fly all
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    Genomic context

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    See ich in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (30563016..30587466, complement)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene Ras-related GTP binding A/B Neighboring gene carbonic anhydrase beta Neighboring gene uncharacterized LOC133391956 Neighboring gene cuticle protein 19.8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryo development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic hindgut morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ichor
    Names
    AGAP002993-PA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      30563016..30587466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061644840.1 → XP_061500824.1  ichor

      UniProtKB/TrEMBL
      Q7PR27

    2. XM_061644841.1 → XP_061500825.1  ichor

      UniProtKB/TrEMBL
      Q7PR27

    3. XM_311896.6 → XP_311896.5  ichor

      See identical proteins and their annotated locations for XP_311896.5

      UniProtKB/TrEMBL
      Q7PR27
      Conserved Domains (3) summary
      sd00017
      Location:583 → 603
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:581 → 603
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:595 → 620
      zf-H2C2_2; Zinc-finger double domain

    4. XM_061644839.1 → XP_061500823.1  ichor

      UniProtKB/TrEMBL
      Q7PR27

    5. XM_061644838.1 → XP_061500822.1  ichor

      UniProtKB/TrEMBL
      Q7PR27
    Nucleotide Protein Strain
    Heading Accession and Version

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