U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC1274243 cadherin-87A [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1274243, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC1274243
    Gene description
    cadherin-87A
    See related
    VectorBase:AGAMI1_002007
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP003579
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC1274243 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (39544860..39691897, complement)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene ras-related and estrogen-regulated growth inhibitor Neighboring gene aldehyde dehydrogenase 1A1 Neighboring gene protein D2 Neighboring gene sorbitol dehydrogenase Neighboring gene sorbitol dehydrogenase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cadherin-87A
    Names
    AGAP003579-PA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      39544860..39691897 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061644860.1 → XP_061500844.1  cadherin-87A isoform X2

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    2. XM_061644854.1 → XP_061500838.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    3. XM_061644853.1 → XP_061500837.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    4. XM_061644855.1 → XP_061500839.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    5. XM_061644850.1 → XP_061500834.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    6. XM_061644852.1 → XP_061500836.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    7. XM_061644857.1 → XP_061500841.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    8. XM_061644856.1 → XP_061500840.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    9. XM_061644851.1 → XP_061500835.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5

    10. XM_061644859.1 → XP_061500843.1  cadherin-87A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GIJ5
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.