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    Prp38 pre-mRNA processing factor 38 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1282021, updated on 22-Jun-2024

    Summary

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    Gene symbol
    Prp38
    Gene description
    pre-mRNA processing factor 38
    See related
    VectorBase:AGAMI1_007936
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP001145
    Orthologs
    fruit fly all
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    Genomic context

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    See Prp38 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (621415..622927)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 3 Neighboring gene uncharacterized LOC133391238 Neighboring gene transmembrane protein 185B Neighboring gene WD repeat-containing protein 3 Neighboring gene uncharacterized LOC5667639

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor 38
    Names
    AGAP001145-PA
    pre-mRNA-splicing factor 38A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      621415..622927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_322016.6 → XP_322016.4  pre-mRNA-splicing factor 38

      See identical proteins and their annotated locations for XP_322016.4

      UniProtKB/TrEMBL
      Q7PX02
      Conserved Domains (2) summary
      pfam03371
      Location:10 → 172
      PRP38; PRP38 family
      pfam12871
      Location:179 → 254
      PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term
    Nucleotide Protein Strain
    Heading Accession and Version

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