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    hfp Poly(U)-binding-splicing factor hfp [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1275288, updated on 3-Dec-2024

    Summary

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    Gene symbol
    hfp
    Gene description
    Poly(U)-binding-splicing factor hfp
    See related
    VectorBase:AGAMI1_015144
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP010553
    Orthologs
    fruit fly all
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    Genomic context

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    See hfp in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 3 NC_064602.1 (64124315..64133969, complement)

    Chromosome 3 - NC_064602.1Genomic Context describing neighboring genes Neighboring gene alpha-L-iduronidase Neighboring gene PRADC1-like protein Neighboring gene serine/threonine-protein kinase 10 Neighboring gene antigen 5 like allergen Cul n 1 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 Neighboring gene uncharacterized LOC133393674 Neighboring gene cationic amino acid transporter 3 Neighboring gene Jumonji domain containing 5 Neighboring gene B-cell receptor-associated protein 31

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064602.1 Chromosome 3 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(U)-binding-splicing factor half pint
    Names
    AGAP010553-PA
    poly(U)-binding-splicing factor PUF60

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064602.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      64124315..64133969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_314526.4 → XP_314526.4  poly(U)-binding-splicing factor half pint

      UniProtKB/TrEMBL
      A0A1S4H5B1, Q7PPS0
    Nucleotide Protein Strain
    Heading Accession and Version

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