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    LOC1275507 semaphorin-1A [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1275507, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC1275507
    Gene description
    semaphorin-1A
    See related
    VectorBase:AGAMI1_000576
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    sema1a; AGAP008656
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1275507 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 3 NC_064602.1 (14069915..14288894, complement)

    Chromosome 3 - NC_064602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC133393577 Neighboring gene uncharacterized LOC133394080 Neighboring gene uncharacterized LOC3291773 Neighboring gene uncharacterized LOC5668161

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064602.1 Chromosome 3 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-1A
    Names
    AGAP008656-PA
    semaphorin 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064602.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      14069915..14288894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061662586.1 → XP_061518570.1  semaphorin-1A isoform X2

      UniProtKB/TrEMBL
      A0A1S4GZK6, Q7PPN1

    2. XM_061662588.1 → XP_061518572.1  semaphorin-1A isoform X2

      UniProtKB/TrEMBL
      A0A1S4GZK6, Q7PPN1

    3. XM_061662587.1 → XP_061518571.1  semaphorin-1A isoform X2

      UniProtKB/TrEMBL
      A0A1S4GZK6, Q7PPN1

    4. XM_061662575.1 → XP_061518559.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    5. XM_061662577.1 → XP_061518561.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    6. XM_061662580.1 → XP_061518564.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    7. XM_061662578.1 → XP_061518562.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    8. XM_061662585.1 → XP_061518569.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    9. XM_061662576.1 → XP_061518560.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    10. XM_061662581.1 → XP_061518565.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    11. XM_061662583.1 → XP_061518567.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    12. XM_061662584.1 → XP_061518568.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1

    13. XM_061662579.1 → XP_061518563.1  semaphorin-1A isoform X1

      UniProtKB/TrEMBL
      A0A1S4GZM3, Q7PPN1
    Nucleotide Protein Strain
    Heading Accession and Version

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