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    LOC1279400 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1279400, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC1279400
    Gene description
    glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
    See related
    VectorBase:AGAMI1_010427
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP009979
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    Genomic context

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    See LOC1279400 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 3 NC_064602.1 (46526847..46533715, complement)

    Chromosome 3 - NC_064602.1Genomic Context describing neighboring genes Neighboring gene dual oxidase maturation factor 1 mol Neighboring gene dual oxidase Neighboring gene zinc metalloprotease ZmpB Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064602.1 Chromosome 3 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in core 1 O-glycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
    Names
    AGAP009979-PA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064602.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      46526847..46533715 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061663096.1 → XP_061519080.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      A0A1S4H3D7, Q7Q146

    2. XM_319116.5 → XP_319116.5  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      Q7Q146
    Nucleotide Protein Strain
    Heading Accession and Version

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