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    scalloped TEA domain transcription factor 1 homolog scalloped [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1271730, updated on 3-Dec-2024

    Summary

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    Gene symbol
    scalloped
    Gene description
    TEA domain transcription factor 1 homolog scalloped
    See related
    VectorBase:AGAMI1_008317
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP000512
    Orthologs
    fruit fly all
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    Genomic context

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    See scalloped in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) X NC_064600.1 (9038441..9146011)

    Chromosome X - NC_064600.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene post-GPI attachment to proteins factor 2-like Neighboring gene uncharacterized LOC133392121 Neighboring gene probable alpha-aspartyl dipeptidase Neighboring gene RNA-binding motif protein 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064600.1 Chromosome X Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hippo signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein scalloped; transcriptional enhancer factor TEF-1
    Names
    AGAP000512-PA
    AGAP000512-PB
    Transcriptional enhancer factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064600.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      9038441..9146011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061650434.1 → XP_061506418.1  protein scalloped isoform X2

      UniProtKB/TrEMBL
      A0A1S4G9U5

    2. XM_003436968.2 → XP_003437016.2  transcriptional enhancer factor TEF-1 isoform X1

      UniProtKB/TrEMBL
      A0A1S4G9T4
    Nucleotide Protein Strain
    Heading Accession and Version

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