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    Vps50 vacuolar protein sorting 50 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1271918, updated on 3-Dec-2024

    Summary

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    Gene symbol
    Vps50
    Gene description
    vacuolar protein sorting 50
    See related
    VectorBase:AGAMI1_007320
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP000343
    Orthologs
    fruit fly all
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    Genomic context

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    See Vps50 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) X NC_064600.1 (5963163..5969110)

    Chromosome X - NC_064600.1Genomic Context describing neighboring genes Neighboring gene 32 kDa beta-galactoside-binding lectin lec-3 Neighboring gene inhibin subunit beta Neighboring gene proteoglycan 4 Neighboring gene Cuticular protein 97Eb

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064600.1 Chromosome X Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syndetin
    Names
    AGAP000343-PA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064600.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      5963163..5969110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_310775.6 → XP_310775.6  syndetin

      UniProtKB/TrEMBL
      Q7QF78
    Nucleotide Protein Strain
    Heading Accession and Version

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