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    LOC1272221 protein trachealess [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1272221, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC1272221
    Gene description
    protein trachealess
    See related
    VectorBase:AGAMI1_001659
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP000056
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    Genomic context

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    See LOC1272221 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) X NC_064600.1 (926042..930956, complement)

    Chromosome X - NC_064600.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC133391965 Neighboring gene mannose phosphate isomerase Neighboring gene scribble planar cell polarity protein Neighboring gene tau-tubulin kinase asator Neighboring gene paired box protein shaven

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064600.1 Chromosome X Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trachealess
    Names
    AGAP000056-PA
    neuronal PAS domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064600.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      926042..930956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061649206.1 → XP_061505190.1  protein trachealess isoform X1

      UniProtKB/TrEMBL
      A0A1S4G8H5

    2. XM_311103.6 → XP_311103.6  protein trachealess isoform X2

      UniProtKB/TrEMBL
      A0A1S4G8H5

    3. XM_061649200.1 → XP_061505184.1  protein trachealess isoform X1

      UniProtKB/TrEMBL
      A0A1S4G8H5

    4. XM_061649190.1 → XP_061505174.1  protein trachealess isoform X1

      UniProtKB/TrEMBL
      A0A1S4G8H5
    Nucleotide Protein Strain
    Heading Accession and Version

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