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    PF3D7_1002400.1 transformer-2 protein homolog beta, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810186, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1002400.1
    Gene description
    transformer-2 protein homolog beta, putative
    Locus tag
    PF3D7_1002400.1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Old locus tag
    PF3D7_1002400.2
    Orthologs
    all
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    Genomic context

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    See PF3D7_1002400.1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Sequence:
    Chromosome: 10; NC_037281.1 (121115..123291)

    Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene tryptophan-rich antigen 3 Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene conserved protein, unknown function Neighboring gene conserved Plasmodium protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037281.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rapid inducible protein displacement in Plasmodiumin vivo and in vitro using knocksideways technology. Hughes KR, et al. Wellcome Open Res, 2017 Mar 14. PMID 28428983, Free PMC Article
    2. Functional Characterization of the m(6)A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. Sinha A, et al. mBio, 2021 Apr 27. PMID 33906926, Free PMC Article
    3. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article
    4. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    5. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding HDA PubMed 
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    part_of spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    transformer-2 protein homolog beta, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037281.1 Reference assembly

      Range
      121115..123291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347277.1 → XP_001347313.1  transformer-2 protein homolog beta, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347313.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0L7KII3, A0A2I0BQQ5, Q8IK12
      Conserved Domains (2) summary
      smart00360
      Location:21 → 93
      RRM; RNA recognition motif
      COG0724
      Location:2 → 216
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    2. XM_024473273.1 → XP_024329084.1  transformer-2 protein homolog beta, putative [Plasmodium falciparum 3D7]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0L7KII3, A0A143ZX28, A0A2I0BQQ3
      Conserved Domains (2) summary
      smart00360
      Location:21 → 93
      RRM; RNA recognition motif
      COG0724
      Location:2 → 214
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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